Query= MSMg01no301_b21.b1 MSMg01no301_b21.b1 CHROMAT_FILE:
MSMg01no301_b21.b1 PHD_FILE: MSMg01no301_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:26 2005
(325 letters)
>mm_chr11_48296355_48297079
Length = 725
Score = 621 bits (321), Expect = 0.0
Identities = 321/321 (100%)
Strand = Plus / Minus
Query: 5 gaattcatgggcaggaaccagtattccattttggattggctatttattctggctgttttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattcatgggcaggaaccagtattccattttggattggctatttattctggctgttttt 466
Query: 65 gtggattcgagtgactagtacgtgtccgtggtccaatatttaaagtagtttcagatgatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gtggattcgagtgactagtacgtgtccgtggtccaatatttaaagtagtttcagatgatc 406
Query: 125 catagaggtcagttgaggtctcacttggaaagtcaagaagaatcgtttctgtagaagatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 catagaggtcagttgaggtctcacttggaaagtcaagaagaatcgtttctgtagaagatt 346
Query: 185 gatgttttgttgtcgagccaatagtgatcattttcagtctcacaatgaataaaattaata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gatgttttgttgtcgagccaatagtgatcattttcagtctcacaatgaataaaattaata 286
Query: 245 aaccaaagttacagattggaacttggagaaaaagcaaggctgagagaagccaaaggtcac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaccaaagttacagattggaacttggagaaaaagcaaggctgagagaagccaaaggtcac 226
Query: 305 acagtgacattatactctctg 325
|||||||||||||||||||||
Sbjct: 225 acagtgacattatactctctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space: 226256
Effective search space used: 226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_b21.g1 MSMg01no301_b21.g1 CHROMAT_FILE:
MSMg01no301_b21.g1 PHD_FILE: MSMg01no301_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:26 2005
(609 letters)
>mm_chr11_48201738_48202747
Length = 1010
Score = 783 bits (405), Expect = 0.0
Identities = 428/437 (97%), Gaps = 5/437 (1%)
Strand = Plus / Plus
Query: 176 aaaacagctaggagaaaagagagtgaaagacaaagttctggtttatttcatttcctggga 235
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 376 aaaacagctaggagaaaagagagtgaaagacaaagttctggtttatttcttttcctggga 435
Query: 236 cccaagaccaaacccatgtcattttgaattttcaacataaaatatctatagcatcagaaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cccaagaccaaacccatgtcattttgaattttcaacataaaatatctatagcatcagaaa 495
Query: 296 attcataaaatcatagttggcaaaacattttggatgatactgtgaccacatagagtaaca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 attcataaaatcatagttggcaaaacattttggatgatactgtgaccacatagagtaaca 555
Query: 356 aaatagaccctagtggtcttcaaagtcaggcaaataattatactacataattaataaata 415
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaatagaccctagtggttttcaaagtcaggcaaataattatactacataattaataaata 615
Query: 416 agctatacttggttgtcacactataatacattggtcctttgaaccttaagagttaaaaaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agctatacttggttgtcacactataatacattggtcctttgaaccttaagagttaaaaaa 675
Query: 476 aaa-gcata--acctttattgtgcattttctcatatagttagagtgatcaaagatttatt 532
||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aaaagcatagaa--tttattgtgcattttctcatatagttagagtgatcaaagatttatt 733
Query: 533 cttacccagttttccaactaatggctaactgttgacactataaagtacctaatatttaaa 592
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 734 cttacccagttttccaactaatggctaactgttgacactataaagtacctattatttaaa 793
Query: 593 aatatcatttcatatat 609
||| |||||||||||||
Sbjct: 794 aatctcatttcatatat 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space: 599000
Effective search space used: 599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
