Query= MSMg01no301_f21.b1 MSMg01no301_f21.b1 CHROMAT_FILE:
MSMg01no301_f21.b1 PHD_FILE: MSMg01no301_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:45 2005
(321 letters)
>mm_chr11_75993655_75994380
Length = 726
Score = 569 bits (294), Expect = e-166
Identities = 313/322 (97%), Gaps = 7/322 (2%)
Strand = Plus / Minus
Query: 5 gaattcaagcatcaggcttgagggcaaatgctctactggctgagccatcttgatgtctct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 581 gaattcaagcatcaggcttgagggcaaatgctctactggctgagccatcttgatg--tct 524
Query: 65 ctcacactcctcctgcaattatatttttaagcattcttttgttgctgttgctaaaactta 124
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 523 ctcacagtcctcctgcaattatattttaaagcattcttttgttgctgttgctaaaactta 464
Query: 125 tactactcacacatttttggggggcaaactaaaacaacaataaaattccattcctaaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tactactcacacatttttggggggcaaactaaaacaacaataaaattccattcctaaaac 404
Query: 185 tataatgttttttaaaaact--aaaaaaaaaagcaaattatattattcctgaagcaattt 242
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tataatgttttttaaaaactaaaaaaaaaaaagcaaattatattattcctgaagcaattt 344
Query: 243 ttataaaactatatgtacgg---aaaaaaaaaaagttcagcagggccagatactcctctg 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttataaaactatatgtacggaaaaaaaaaaaaaagttcagcagggccagatactcctctg 284
Query: 300 tcgaggttttcacaatgttgaa 321
||||||||||||||||||||||
Sbjct: 283 tcgaggttttcacaatgttgaa 262
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 726
Length adjustment: 9
Effective length of query: 312
Effective length of database: 717
Effective search space: 223704
Effective search space used: 223704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_f21.g1 MSMg01no301_f21.g1 CHROMAT_FILE:
MSMg01no301_f21.g1 PHD_FILE: MSMg01no301_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:45 2005
(379 letters)
>mm_chr11_75777929_75778705
Length = 777
Score = 638 bits (330), Expect = 0.0
Identities = 365/380 (96%), Gaps = 8/380 (2%)
Strand = Plus / Plus
Query: 1 cacctctggtctgcccacccgcacacagc--tgtgagtcagacaggtccctggccctctc 58
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 199 cacctctggtctgcccacccgcacgcagctgtgtgagtcagacaggtccctggccctctc 258
Query: 59 tgagcttgcttcccaatgggcagagtggagacaataatcttgatgtctgcctctctgagt 118
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 259 tgagcttgcttcccaatgggcagagtggagacaataatcttgatgtttgcctctctgagt 318
Query: 119 gcttcaagaacctaaaagccagtgaaggcctgagccccttggaacaccgcccaactcagg 178
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 319 gcttcaagaacctaaaagccagtgaaggcctgagccccttgga--actgcccaactcagg 376
Query: 179 acgcagaatgcccactcttggttaagaaggcaacagcagagaatgttcagcttggcatag 238
|| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acacggaacgcccactcttggttaagaaggcaacagcagagaatgttcagcttggcatag 436
Query: 239 aacatgatgtaaccaagccattcagagatctagtttgagcagggctccaggcatgggatg 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aacacgatgtaaccaagccattcagagatctagtttgagcagggctccaggcatgggatg 496
Query: 299 ggaagttctcagaaacttgagggcagttcactgaacacctccaggatgtgcagtatgggg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggaagttctcagaaacttgagggcagttcactgaacacctccaggatgtgcagtatgggg 556
Query: 359 gggggaggggtactgagagg 378
||||| |||||||||||
Sbjct: 557 ggggg----gtactgagagg 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 777
Length adjustment: 9
Effective length of query: 370
Effective length of database: 768
Effective search space: 284160
Effective search space used: 284160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
