BAC Information

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BAC

Clone NameMSMg01-302D07
Chromosome11 (Build37)
Map Location 86,044,692 - 86,045,011
singlet/doubletsinglet
Overlap geneInts2
Upstream geneAppbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803
Downstream geneThrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302D07.T7 (MSMg01no302_d07.b1)MSMg01-302D07.TJ (MSMg01no302_d07.g1)
ACCAG428175AG428176
length737742
length of high quality
(start - end)
321 (41 - 361)519 (72 - 590)
definitionCHROMAT_FILE: MSMg01no302_d07.b1 PHD_FILE: MSMg01no302_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:47 2005CHROMAT_FILE: MSMg01no302_d07.g1 PHD_FILE: MSMg01no302_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGAAGGGAGCTGGAGGACCCAGTGCTATAGCCCATGAGACTGCTTTGGGG
AGTTGCCAAGGGAAAGAGAAGTGATGCGGTAACTGAAGTGAATAAGGTCA
GGAAGCGACTTGAAAATTATTTGTGTGTGTGAGTGCCTGTGTATGTAAGT
ACACCACAGGTACGGTGCCCACTGATCTTCTGGAATTAAGAGTGCAAGCA
GGGGGCTGGCGAGATGGCTCAGCAGGTAAGAGCACTGACTGCTCTTCCAA
AGGTCCTGAGTTCAAATCCCATCTTTCACATGGTGGCTCACAACCACCCA
CAGTGAGATTTGACGTCCNCTTTAGGCGATNTCAAGTNAGNTACAGCATA
CTTATGTATAATTATNNNTNNNTCTAAAAAAAAAAAAAAAAGAGTGGGGG
CGGTTGTGAGTCACTGATGTGGGTGCTAATGCTCTCAATCACCTCTCCAT
CTCTCTAGCCCTGAATTTTTAAGATGAAAAAGAGACATGTTATTCTCTTG
CTATTGAGAGGTGTGTCCTGCAGAGAGGGGTTGTTGAAGCCAGTCTCTGC
AGTTACATCCTTGATGAATAGGAAGAGATGATAGAGAATACCTTTTCCTG
GTAGGAAACACCCTGGTTAGGCGGTTTTCTCTGGTCTAGTTTTTGTCTTC
CAAGGGTGTAAAAAACTTCACGGCATTGTTGAGAGGN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTAACCATGAAG
GGGTGTTGAATTTTGTCAAATGCTTTCTCACATCTAATGAGATGATCATG
TGTTGTTGTTTTTTTTCTTTGAGTTTGTTTATATAGTGGATTACATTGAT
GGATTTCCGTATATTGAACCATCCTGGCATTCCTGGGATAAAGCCTACTT
AATCACGATGGATGATTGTTTTGATGTGCTTTTGGATTCAGTTTGTGAGA
ATTTTATTGAGTATTTTTGCATTGATATTCATAAGGGAAATTGGTCTGAA
GTTATCTTTCTTTGTTGGGTCTTTGTGCGGTTTAGGTACAGGTGTAATTG
TGGCTTCATAGAATGAACTGGGTAGTGTTCCTTCTGTTTCTATGTTGTGG
AATAGTTTGAAGAGAATTGTTATTAGGTCTTCTTTGAAGGTCTGATAGAA
TTCTGCATTAAAACCATCTGGTCCTGGGCTTTTTATGGTTGGGAGACTTT
TAATGACTGCGGCTATTTCTCTAGGGGTTATGGGACTGTTTAAATGGTTT
CCAGCTCAAAGGTACAAGTAGGTGGGATATCCACTTTTCATTATAACTTA
AAGGGTTAAGTGGCGTTGTACATCTCACTAGATAATTGGCCAAGCCCATG
GGAAACCACAAAAATTATACTTTTGGTATTCTTAAAAATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_d07.b1 MSMg01no302_d07.b1 CHROMAT_FILE:
MSMg01no302_d07.b1 PHD_FILE: MSMg01no302_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:47 2005
         (321 letters)



>mm_chr11_86044596_86045321
          Length = 726

 Score =  557 bits (288), Expect = e-163
 Identities = 310/320 (96%), Gaps = 5/320 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaagggagctggaggacccagtgctatagcccat-----gagactgctttggg 59
           |||||||||||||||||||||||||||||||||||| ||||     ||||||||||||||
Sbjct: 416 gaattcagaagggagctggaggacccagtgctatagaccatgagaagagactgctttggg 357

                                                                       
Query: 60  gagttgccaagggaaagagaagtgatgcggtaactgaagtgaataaggtcaggaagcgac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gagttgccaagggaaagagaagtgatgcggtaactgaagtgaataaggtcaggaagcgac 297

                                                                       
Query: 120 ttgaaaattatttgtgtgtgtgagtgcctgtgtatgtaagtacaccacaggtacggtgcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttgaaaattatttgtgtgtgtgagtgcctgtgtatgtaagtacaccacaggtacggtgcc 237

                                                                       
Query: 180 cactgatcttctggaattaagagtgcaagcagggggctggcgagatggctcagcaggtaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 cactgatcttctggaattaagagtgcaagcagggggctggcgagatggctcagcaggtaa 177

                                                                       
Query: 240 gagcactgactgctcttccaaaggtcctgagttcaaatcccatctttcacatggtggctc 299
           |||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||
Sbjct: 176 gagcactgactgctcttccaaaggtcctgagttcaaatcccagcaaccacatggtggctc 117

                               
Query: 300 acaaccacccacagtgagat 319
           ||||||||||||||||||||
Sbjct: 116 acaaccacccacagtgagat 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 726
Length adjustment: 9
Effective length of query: 312
Effective length of database: 717
Effective search space:   223704
Effective search space used:   223704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)