Query= MSMg01no302_f15.b1 MSMg01no302_f15.b1 CHROMAT_FILE:
MSMg01no302_f15.b1 PHD_FILE: MSMg01no302_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:58 2005
(314 letters)
>mm_chr11_5334601_5335314
Length = 714
Score = 592 bits (306), Expect = e-173
Identities = 309/310 (99%)
Strand = Plus / Plus
Query: 5 gaattcactcccagaaaaggataataaagacaatacaagtcaaagtgcactggggactct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcccagaaaaggataataaagacaatacaagtcaaagtgcactggggactct 264
Query: 65 aaagctccaggctcatttaaagatttcctggaactgaaccaaggtagaactgttctagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagctccaggctcatttaaagatttcctggaactgaaccaaggtagaactgttctagaa 324
Query: 125 agagaactgtaagggagccctaagcacagcctctcttatatcctcacacagagttcactt 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagcactgtaagggagccctaagcacagcctctcttatatcctcacacagagttcactt 384
Query: 185 atgctaaaggagaaatgagtcatgacactttcaagacaaccttcagcacatctcttgtaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgctaaaggagaaatgagtcatgacactttcaagacaaccttcagcacatctcttgtaa 444
Query: 245 ctaaaagaaagcaagacctgagcatggtaattcatgtctgtgatcccaatacttgagaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctaaaagaaagcaagacctgagcatggtaattcatgtctgtgatcccaatacttgagaga 504
Query: 305 ctgaagcaga 314
||||||||||
Sbjct: 505 ctgaagcaga 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_f15.g1 MSMg01no302_f15.g1 CHROMAT_FILE:
MSMg01no302_f15.g1 PHD_FILE: MSMg01no302_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:58 2005
(285 letters)
>mm_chr11_5413307_5413991
Length = 685
Score = 536 bits (277), Expect = e-157
Identities = 283/285 (99%)
Strand = Plus / Minus
Query: 1 aagaccagcctgggtagagtttcgtggcctcgagaaatggatggactctctttgctttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aagaccagcctgggtagagtttcgtggcctcgagaaatggatggactctctttgctttac 426
Query: 61 tagggttatgggtttcatgttcttagtaccatgtgtagcaggcagacacagctcaacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tagggttatgggtttcatgttcttagtaccatgtgtagcaggcagacacagctcaacaca 366
Query: 121 gcctctacccgcctggggactctctcctgcttcaggtccagccctcagggaaacccttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gcctctacccgcctggggactctctcctgcttcaggtccagccctcagggaaacccttgg 306
Query: 181 tgatgctgtgggaaactatttcagggtgagctggagcaaggcaaaagttggtgagtttat 240
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgatgctatgggaaagtatttcagggtgagctggagcaaggcaaaagttggtgagtttat 246
Query: 241 taggaaagacatgggtgtgactgctctagagggttttttacaatg 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taggaaagacatgggtgtgactgctctagagggttttttacaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
