BAC Information

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BAC

Clone NameMSMg01-302G15
Chromosome11 (Build37)
Map Location 112,441,792 - 112,610,038
singlet/doubletdoublet
Overlap geneLOC100041610, LOC671963, LOC667047, BC006965
Upstream geneLOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020, EG668396, EG667038
Downstream geneSox9, 2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302G15.T7 (MSMg01no302_g15.b1)MSMg01-302G15.TJ (MSMg01no302_g15.g1)
ACCAG428311AG428312
length742738
length of high quality
(start - end)
314 (39 - 352)286 (69 - 354)
definitionCHROMAT_FILE: MSMg01no302_g15.b1 PHD_FILE: MSMg01no302_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:03 2005CHROMAT_FILE: MSMg01no302_g15.g1 PHD_FILE: MSMg01no302_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,609,729 - 112,610,038)(112,441,792 - 112,442,077)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TATTATCAGGTTGTCTGGGTTAACCTGATTATTATGATGGTAGATGTGCT
CAAGGCAGCTTAGTGTGGAGGCAACATTTTAGGTCTTGTTCAGAGTCAAA
TTTTAGGGTTTTTTTTTTGGGGGGGGGGTAGGTAAATATAAGAGACCTTT
CACAAACTCAAAACATGTCTCCAGGCTTTGTCCTATTTGCTATTCCGTGG
AAGACTCTCCCTGTCTCAACTCTGCCCCTCTTTTGGATGGTCACTGAGAA
CTCCAAGTCCCTGGGCATGTACTTCAGTGGTAGCAAGGCACACTGGGATT
GAATTTAATANTTCCCAANGGCAAGNACCCTGGTAGAAAGTGAGGAAGAA
AGGCATTTCTGAACCATCCAAAAAGAAAAAGATTGTCTGAGGGGCAGATG
GGAACTCCAGGGTTTAGTACCAGTATATTCAAAACATTGGGTGGTTTCAC
ACAGTGATTCAACCTTTCTGAGCCTCAGGTGTTCTTCCTCTGGGAAGGAA
GAACCAAGAAACCGATTCCATTGAGACAAGTCTGGTTGGGCTGGAGAGAT
GGCTCAGCTGTTAAAGGTAACACTCTCTACCTAATATATAAGATAGAAAC
CCAGTCAGATGTGGTCCCCTCTGTGGCGTCCAGCGAATTGCTGAAATTCG
GACCCGCTTACCCCCAGTGAGTTATTTCCCCATGACATTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTAAAGGTTGATCAACCACCAAAGAGAGGGA
GGTTTGCTATATGAACCTCCAACACTTTGAATTTTGAATAAATTATCTCC
CTTGAACTTTTGATCCTTCTGCCTCTGCTTCCTGGACGCTAGGATTACAG
ATGTGCATTACAGAGCTCCCTGAATCCTAGGCAAGCTGAGTTCATATGAA
GTAGTTTTGCCCAGCCACATTTTCAATGTCTGGATCTTTGGAAAGACTCC
AAAAAGGAAGCTTCATCTAGACCCGAGACAACATTAGGACACTGTGATCA
AATGTTTCTAGTTTATCNTTCTTAGCCTTTCTTACTACCTTGACCAGTGA
CAGAGATAGCACCTACTTCAAAATAAAGCCCCCATATCGGGTTGCGCAGC
TTTCAAAAAAGATTGGGAATCAGATACAGGGAGAGAATGGAAAATACAAG
TCTCCTCTCAGAAGGTAGCTTTAGCCGAGACTGTAATGTTTGGCAAAATA
AATCTAAATGAATCAAGTAGGACTGAAAGATTACAGTTGAAACCAGAACC
AGTCGCTCAAGTCCCTTATCAGGTATGATCCGACCCCGAGACGGAGGTAA
AATGAGCAATGTAAGTGAGCTATAAAACCAGATCCTCGGTGCACGCAAAT
CCACTCTCCTCGGGTTCTTACGCTTTTCGAAAAGGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_g15.b1 MSMg01no302_g15.b1 CHROMAT_FILE:
MSMg01no302_g15.b1 PHD_FILE: MSMg01no302_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:03 2005
         (314 letters)



>mm_chr11_112609525_112610238
          Length = 714

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctattatcaggttgtctgggttaacctgattattatgatggtagatgtgctca 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattctctattatcaggttgtcggggttaacctgattattatgatggtagatgtgctca 455

                                                                       
Query: 65  aggcagcttagtgtggaggcaacattttaggtcttgttcagagtcaaattttagggtttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aggcagcttagtgtggaggcaacattttaggtcttgttcagagtcaaattttagggtttt 395

                                                                       
Query: 125 ttttttggggggggggtaggtaaatataagagacctttcacaaactcaaaacatgtctcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttttttggggggggggtaggtaaatataagagacctttcacaaactcaaaacatgtctcc 335

                                                                       
Query: 185 aggctttgtcctatttgctattccgtggaagactctccctgtctcaactctgcccctctt 244
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aggctttgtcttatttgctactccgtggaagactctccctgtctcaactctgcccctctt 275

                                                                       
Query: 245 ttggatggtcactgagaactccaagtccctgggcatgtacttcagtggtagcaaggcaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttggatggtcactgagaactccaagtccctgggcatgtacttcagtggtagcaaggcaca 215

                     
Query: 305 ctgggattga 314
           ||||||||||
Sbjct: 214 ctgggattga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no302_g15.g1 MSMg01no302_g15.g1 CHROMAT_FILE:
MSMg01no302_g15.g1 PHD_FILE: MSMg01no302_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:03 2005
         (286 letters)



>mm_chr11_112441592_112442277
          Length = 686

 Score =  476 bits (246), Expect = e-139
 Identities = 276/286 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaaggttgatcaaccaccaaagagagggaggtttgctatatgaacctccaacacttt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaaggctgatcaaccaccaaagagagggaggtttgctatatgaacctccaacacttt 260

                                                                       
Query: 61  gaattttgaataaattatctcccttgaacttttgatccttctgcctctgcttcctggacg 120
           ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 261 gaattttgaataaataatctcctttgaacttttgatacttctgcctctgcttcctggacg 320

                                                                       
Query: 121 ctaggattacagatgtgcattacagagctccctgaatcctaggcaagctgagttcatatg 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataggattacagatgtgcattacagagctccctgaatcctaggcaagctgagttcatatg 380

                                                                       
Query: 181 aagtagttttgcccagccacattttcaatgtctggatctttggaaagactccaaaaagga 240
           ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
Sbjct: 381 aagtagttttgcccagccacattctcagtgtctggatctttggaaagactccaaaaagca 440

                                                         
Query: 241 agcttcatctagacccgagacaacattaggacactgtgatcaaatg 286
           ||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 441 agcttcagctagacccgagacaacattagggcactgtgatcaaatg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)