BAC Information

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BAC

Clone NameMSMg01-302H15
Chromosome11 (Build37)
Map Location 37,583,795 - 37,584,105
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz2, LOC100039148
Downstream geneLOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302H15.T7 (MSMg01no302_h15.b1)MSMg01-302H15.TJ (MSMg01no302_h15.g1)
ACCAG428354AG428355
length728730
length of high quality
(start - end)
319 (46 - 364)566 (78 - 643)
definitionCHROMAT_FILE: MSMg01no302_h15.b1 PHD_FILE: MSMg01no302_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:07 2005CHROMAT_FILE: MSMg01no302_h15.g1 PHD_FILE: MSMg01no302_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTGTGTGTTGGGGAAAATGGAAAAAAGTCAAAAATGTTCATATT
CAGTCTCCTTTTTGATTTTTGAACAGCACTTCCTATATTGTCTTCCCTGT
GGGGAGTGATGCCAACAGGACCCTTCGAGAGAGTGTCTCAGGGTTTCCTG
GGGCATTAACCCAACGGGAGCACAGTACCTAGTTGATGAAAAGGCTGGAT
TAATTTCTAGCTCTGATTCTAGCTCCTTTCTGGTGAGCACAAGCCTGCAT
GACATCACTCCCCATGCCTCCATGGTTTGCTTTGGATGTCAACTTCCAGT
CATCCTTTCTTTGGGTAAATTCAAGNTCTNTTCCGTATATTCAGCCTCGA
AAGAAGGCATACTGAGTGTAGCATGAAAAAAAAAAAATTGCTTCTGGGTG
AGCCCAAAATTTTGGGTAGAAAAAATAAATGTCAGGTATTGATAAAAGTG
GTCCTAGCATAAAGGAGAACTGTCCAGCAAAGGGATGAGATGGTCAGAGT
TTGTGGCTGAGTGTGTTGCTCCTGTATTGGAAAATCTTTTGTCCATGTAG
GGAGATTTTCCACACCTACTAGAGAGACACCAAATCAGATTCAAATGCTG
GCTCCAGAGTAAACTCCAGGATGGTGCTGTCATCATTTCATCTCCTGTTT
TATAGGTCTTGTCAGTTTCTGAAACTCG
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATATCTCTAATCATCAGGGTAA
AGCCAATCAAAATTATTATGAGATATCAATACTTGCTAGGATGGCAGACA
TGCATGGGGGAAAGATAAATTGAAAAAGTAAGGAGGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCACAATGG
GGTTAGAGTGGCGAGAAATAATAAATTGTGATAAGGATGTGGGGAAGATG
GAACCTTTGGGCTCTGGTGCTGAGAAGGATGTCTTACTATCAAAAGTTGA
TGTGGAAGTGACACTAAAGTATTTCAAATATTAAGTATACACTCATATAC
ATTGAAGAAATTATATTTTTAAATAGGTACCCAAGAGAGTTGAAGGCAGA
GACTGAAACAAATAAATACACTGATAAGAGCAACATTATTTACAATAACC
AAAACCCAGAAACTATGTATCCAAGCATTTCTCCATTAACATATAGGGAG
AGAATAAAAACCTAATGCAGATATAAAATAAAATAGTACTATAAATCTCT
CATGTCAGATGGGACTTTTGACATGCTATAATATTGCTGAACCTTTAAAA
TTTGCTAAGTGACATACATCCTTTACAGAAGAAAAAAATATTATATGATT
CCACATACATTANATAAATAATCAGACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_h15.b1 MSMg01no302_h15.b1 CHROMAT_FILE:
MSMg01no302_h15.b1 PHD_FILE: MSMg01no302_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:07 2005
         (319 letters)



>mm_chr11_37583591_37584309
          Length = 719

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgtgtgttggggaaaatggaaaaaagtcaaaaatgttcatattcagtctcct 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctatgtgtgttggggaaaatggaaaaaagtcaaaaatgttcatattcagtctcct 456

                                                                       
Query: 65  ttttgatttttgaacagcacttcctatattgtcttccctgtggggagtgatgccaacagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttttgatttttgaacagcacttcctatattgtcttccctgtggggagtgatgccaacagg 396

                                                                       
Query: 125 acccttcgagagagtgtctcagggtttcctggggcattaacccaacgggagcacagtacc 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 395 acccttcgagagagtgtctcagggtttcctggggcattaacccaatgggagcacagtacc 336

                                                                       
Query: 185 tagttgatgaaaaggctggattaatttctagctctgattctagctcctttctggtgagca 244
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 335 tagttgatgaaaagactggattaatttctagctctgattctagctcctctctggtgagca 276

                                                                       
Query: 245 caagcctgcatgacatcactccccatgcctccatggtttgctttggatgtcaacttccag 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 275 caagcctgcatgacatcactccccatgcctccacggtttgctttggatgtcaacttccag 216

                      
Query: 305 tcatcctttct 315
           |||||||||||
Sbjct: 215 tcatcctttct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)