BAC Information

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BAC

Clone NameMSMg01-302J04
Chromosome11 (Build37)
Map Location 50,449,679 - 50,639,551
singlet/doubletdoublet
Overlap geneAdamts2, Zfp354c
Upstream geneFlt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream gene9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302J04.T7 (MSMg01no302_j04.b1)MSMg01-302J04.TJ (MSMg01no302_j04.g1)
ACCAG428423AG428424
length718739
length of high quality
(start - end)
240 (76 - 315)281 (80 - 360)
definitionCHROMAT_FILE: MSMg01no302_j04.b1 PHD_FILE: MSMg01no302_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:14 2005CHROMAT_FILE: MSMg01no302_j04.g1 PHD_FILE: MSMg01no302_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,639,312 - 50,639,551)(50,449,679 - 50,449,959)
sequence
GGGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXGTCCGACGGATCCGC
GGAATTCTCTCAATGCTAAACAAGACCCATTTCCTAATTTCCTGCCTAAG
CCAAAGGCTTATTTATTATTTATTTTTTAAATTATTTTTATTTTTTATTT
TATGTTATTTATTATATTATATTTTATTTATTATTATTATTATTTATTAT
CAACAGGTACCACATCCATACAGACATAAAACATAATTTAAAATATCTTC
TGTGTCCTTCAGTTGCCAGGGAAATTTGGCCCTTTCTTTTGGGTTCTTAA
CTTCATTAATAAAAGAATTTATTATGTACTCAGAAGCTTGAAGAAAATGT
TATTAGAGGCTGATAACACCCCCAGTTCAGGCAAGCAGTAAGTCTTGGCA
GCTGCCAGGAGGAGTGAGATAGGAACAAGAAAGGCAGGTTCAGCAACGGA
GATCAGCAGGCTCCTGATGGGCAAACTGTACATGTTAGGCCTGGTTCTTC
CTCCCAGACCCATGCTCTCAGAAGTAAGACTGATACTCAAAATATAGTTA
TTCCTACCCTTGGCCATGTAGCTAGGCTCTGTTCCGAATAGATCATAACT
CAATTAACCCAATTATTTTTACCCACGCTCTGCCACCTGGCCGGTTACCT
GTGCTCCCGCTACATGTGTCCGTCCCCCCACATCTTCCCAGTGGATCTCT
CTCCCGCCTCTGCCCCAA
CTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTCCACAGCCAGATCAGAG
TACTCTAGGAGGGGGACAGAAAGCCCTGAGAGCTAAGGACAGAAACTTGC
TCCTCTCTAGTCCTCTTTACATCACCCTCGGGGTCAGGAGCCTGGCCTGT
GTCTACACCCATAGAAAGATTAGTGGGCATCTGAATGAAAGAGCAGAAAC
GTTGCCTCCAAGGTCTGGTGTGGGTAAAGGCACCAGAGCCCCTGGGGAGG
CAGGAAGTGAGGTGAGGGGTCTGCATGAGGAGAGGGTCCCTGGCAGCCAG
CACCCTATGGATTTATTTTAGAACCCCCGCGCCCGACAGGGGGGAGGCTT
GATTCAGTTAGTAATGTGATTGCTTGAAAAAATGAATTTGATCCTCAGAA
TCCATGTGAAAGGTCAGATGTGAAAAACAAAACAAAAAAACAACAAAAAT
GTTAGATGTGCTTGGCACACTTGCAGTCCCAGTGCTGGGGAGGTAAAGAC
AGGCAACTCCCGCCCTGAGTTATATCCTCAGGAATGACACGCCAGGTGGA
TCTCCATCTGGATGTGCACATAGGCACCTGCTTATATACCCACACACACG
CACATGCGCACTCTTCTTTTACCCCCCTTCACATCTACATTCCCTTTTAA
TAAGCTGCAGGACATAATCTGCCAGATTTATCCCCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_j04.b1 MSMg01no302_j04.b1 CHROMAT_FILE:
MSMg01no302_j04.b1 PHD_FILE: MSMg01no302_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:14 2005
         (240 letters)



>mm_chr11_50638992_50639631
          Length = 640

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccatttcctaatttcctgcctaagccaaaggcttatttattatttattttttaaattat 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 560 cccatttcctaatttcctgcctaaaccaaaggcttatttattatttattttttaaattat 501

                                                                       
Query: 61  ttttattttttattttatgttatttattatattatattttatttattattattattattt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttctattttttattttatgttatttattatattatattttatttattattattattattt 441

                                                                       
Query: 121 attatcaacaggtaccacatccatacagacataaaacataatttaaaatatcttctgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 440 attatcaacaggtaccacatccatacagacataaaacataatttaaaatatcttctgtgg 381

                                                                       
Query: 181 ccttcagttgccagggaaatttggccctttcttttgggttcttaacttcattaataaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccttcagttgccagggaaatttggccctttcttttgggttcttaacttcattaataaaag 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no302_j04.g1 MSMg01no302_j04.g1 CHROMAT_FILE:
MSMg01no302_j04.g1 PHD_FILE: MSMg01no302_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:14 2005
         (281 letters)



>mm_chr11_50449479_50450159
          Length = 681

 Score =  520 bits (269), Expect = e-152
 Identities = 278/281 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtccacagccagatcagagtactctaggagggggacagaaagccctgagagctaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctgtccacagccagatcagagtactctaggagggggacagaaagctctgagagctaagga 260

                                                                       
Query: 61  cagaaacttgctcctctctagtcctctttacatcaccctcggggtcaggagcctggcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaacttgctcctctctagtcctctttacatcaccctcggggtcaggagcctggcctg 320

                                                                       
Query: 121 tgtctacacccatagaaagattagtgggcatctgaatgaaagagcagaaacgttgcctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctacacccatagaaagattagtgggcatctgaatgaaagagcagaaacgttgcctcc 380

                                                                       
Query: 181 aaggtctggtgtgggtaaaggcaccagagcccctggggaggcaggaagtgaggtgagggg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aaggtctggtgtgggtaaaggcaccagagcccctggggaggcagaaagtgaggtgagggg 440

                                                    
Query: 241 tctgcatgaggagagggtccctggcagccagcaccctatgg 281
           |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgcaggaggagagggtccctggcagccagcaccctatgg 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)