Query= MSMg01no302_n06.b1 MSMg01no302_n06.b1 CHROMAT_FILE:
MSMg01no302_n06.b1 PHD_FILE: MSMg01no302_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:33 2005
(616 letters)
>mm_chr11_30005913_30006927
Length = 1015
Score = 1106 bits (572), Expect = 0.0
Identities = 602/612 (98%), Gaps = 1/612 (0%)
Strand = Plus / Minus
Query: 5 gaattcccatcattaacagacttcttgtcttcaactaccttgaagtgtgaccagctctga 64
|||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 815 gaattcccatca-gaagagacttcttgtcttcaacttccttgaagtgtgaccagctctga 757
Query: 65 taaattatagccatttctagataaacttctgcccacccagccactagtggtttccgcgtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 taaattatagccatttctagataaacttctgcccacccagccactagtggtttccgcgtc 697
Query: 125 aaagctgcagcactaaatttttttttacctggtgtctgtatgtactaacccatgtttctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aaagctgcagcactaaatttttttttacctggtgtctgtatgtactaacccatgtttctc 637
Query: 185 tccactcacaccggctcagccttccacaccaactcacatgtgctccttacatgagtttcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tccactcacaccggctcagccttccacaccaactcacatgtgctccttacatgagtttcc 577
Query: 245 tgagattccactagaagagatttgtcaactgtaagacccctcaacattcttttgacttgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tgagattccactagaagagatttgtcaactgtaagacccctcaacattcttttgacttgg 517
Query: 305 gctttgattactttccctcccccaaaatagtgaaaagggaatccaggtgtagtggggata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gctttgattactttccctcccccaaaatagtgaaaagggaatccaggtgtagtggggata 457
Query: 365 cttggcaattcttgccactggcagaagcattgggagtttgagcccatcctgggcaacaaa 424
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 456 cttggcaatcctcgccactggcagaagcattgggagtttaagcccatcctgggcaacaaa 397
Query: 425 gcatgacaaagctaagagaggaggggaaagagtggtagcctgttgctcagaccatgcccg 484
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gcaagacaaaactaagagaggaggggaaagagtggtagcctgttgctcagaccatgcccg 337
Query: 485 caggctgctgctttcacagccaggccaactaagcactctgtcccccaccccatgtctttc 544
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 336 caggctgctgctttcacagccaggccaactaagcactctgtcccccaccccgtgtctttc 277
Query: 545 tgccctgataatccatttaccatattggcatgagaatagagaattttaatcaaaaacaac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgccctgataatccatttaccatattggcatgagaatagagaattttaatcaaaaacaac 217
Query: 605 cttaggattgca 616
||||||||||||
Sbjct: 216 cttaggattgca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1015
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1005
Effective search space: 609030
Effective search space used: 609030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_n06.g1 MSMg01no302_n06.g1 CHROMAT_FILE:
MSMg01no302_n06.g1 PHD_FILE: MSMg01no302_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:33 2005
(674 letters)
>mm_chr11_29826700_29827773
Length = 1074
Score = 1237 bits (640), Expect = 0.0
Identities = 664/672 (98%)
Strand = Plus / Plus
Query: 1 ttgtcaggaactctacaagcaagaaaaaagttgtaaaacaccatttatgcgtggtactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttgtcaggaactctacaagcaagaaaaaagttgtaaaacaccatttatgtgtggtactaa 260
Query: 61 taattccctgaaatatttaaaattatgcaggaaatcaaaatctaatttttaaggtgtcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattccctgaaatatttaaaattatgcaggaaatcaaaatctaatttttaaggtgtcat 320
Query: 121 tcagagaagtaacagcataacactttagtttacaggccctcatacttttctaactaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagagaagtaacagcataacactttagtttacaggccctcatacttttctaactaaatt 380
Query: 181 agattcaaaacaagggataactagatttgaaatattcgagttgaacacttgaatattaga 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 agattcaaaacaagggataactagatttgaaatatttgagttgaacacttgaatattaga 440
Query: 241 ttccttttaatgatttgcttggggaaacgttatatgtaaatgaagattctttgacaccca 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctcttaatgatttgcttggggaaacgttatatgtaaatgaagattctttgacaccca 500
Query: 301 aacacactacaaagaagaataattcaaggtcactgatttccttttgtattttggttcagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacacactacaaagaagaataattcaaggtcactgatttccttttgtattttggttcagc 560
Query: 361 acaagtaatttcttgaggaaacaaaactcacctatattttattaacatgcaagaaagaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaagtaatttcttgaggaaacaaaactcacctatattttattaacatgcaagaaagaaa 620
Query: 421 agcatgttgcagtctttagagctgggggcagtgaggtccacaactggcggggaggggcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcatgttgcagtctttagagctgggggcagtgaggtccacaactggcggggaggggcac 680
Query: 481 agtatggtccttttcagttcccagtatccaagaagacaaggggtagtaagaggcatctaa 540
||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 681 agtgtggtccttttcagttcccagtatccaaaaagacaaggggcagtaagaggcatctaa 740
Query: 541 caggcaaatccaggtatttggcttgataattttgagtcatgctgtctttatcaaatttta 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 caggcaaatccaggtatttggcttgataattttgagtcatgctgtctatatcaaatttta 800
Query: 601 agaccagtccttataaagcacaattgtctatgaatattagtaaactgggcctaggtcaca 660
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agaccaatccttataaagcacaattgtctatgaatattagtaaactgggcctaggtcaca 860
Query: 661 gtacagggaaag 672
||||||||||||
Sbjct: 861 gtacagggaaag 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
