BAC Information

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BAC

Clone NameMSMg01-303D13
Chromosome11 (Build37)
Map Location 15,816,180 - 15,816,829
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432537
Downstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583, Egfr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303D13.T7 (MSMg01no303_d13.b1)MSMg01-303D13.TJ (MSMg01no303_d13.g1)
ACCAG428878AG428879
length743748
length of high quality
(start - end)
653 (41 - 693)211 (69 - 279)
definitionCHROMAT_FILE: MSMg01no303_d13.b1 PHD_FILE: MSMg01no303_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:04 2005CHROMAT_FILE: MSMg01no303_d13.g1 PHD_FILE: MSMg01no303_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TACATCTGACCAGAATATTATCGAAGACATATAAATATATTAAGATGTTT
GATTAACAATGTTTTGGTTTACAATAATAATTTTTAAAATTAAACAATGA
TTTAACAAAATGCTTGCATATAATAATAATACATTGTGGAAGTTTTATTT
AGTCACAACAGAGGGAATAAACAAAATAAGATTATAAAATTTTGTAATAA
GTGCAACATTTTGAGGATTATGATTTTGTATGTGTTTTAGCATAATGTAA
ACTAGCTATTCAGATATTCTGTTGGCCTCCCATCATTAAAACTCATCACT
CAAATTCACATATGAGAGTATCCCTCTGTTTTCTTTAGTACATACATATT
ACCAGCAAAAGAAAAAATAATTAAAATTGCTAATATAAAACATTGCAATT
TCAAGTGGCTACCTTTAGATTTGGTGACTTAAATTGTTGTCTCACACAAG
TGAATAGGAAAGAAAAGGGCATTAAATGAAGGAGAAGTTGGGTGTGTGTC
AACTTTACTTTAATGACTAAATGTTGTTTTATCATGCCTTATGAAGAATT
ACATATTACAATTACATTCTAACCAATTTTTTTTGTATTTGGTAACTGAA
TCTTGTTTGGTATAAAATGTATATTTTTATGGTTTGTCCTGAGGTAACTA
GTTAGGAGAACAGGGGGCATTTCATTTGAATTCTCGAAGTATA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGTCTCTAGCTGCATATGTAGGAGAGGGTGG
CCTAGTCAGCCATCAACGGGAGGAGAAGCCCTTGGTCTTGTGAAGATTCT
ATGCCCCAATATAGGGGAATGCCAGGGCCAGGAACAGGAGTGGGTAGGTT
GGGGAGCAGGGGGAGGCGGACGATGCTCGCTTACTGACCCGGGCCTGCCC
TACAGCAACTGGCCTTTGGCCACTTTATCAAGCGCTGGTATTCTCTGCGC
AGGCCTTGTCCAGTCCTTTTTGACGTCACTGGCTCGCGCCATCTAATCAT
CGCCGTCTGGCTCCGCCCGCCCGTCCGTGCCTGCGGAAGGCTCCGTGGCG
TGTGTTGTCCCCCCTTTGATCTATCGTATCTCCCGCCTCCGCGCCCAACG
TTCGTGTCGCCGCTCTGCGTCGTCGCCATGGCCGATTTGCACGACGGTGA
GTAATCCTGTTTTCCCCCTTCTCACTCCGGGACCGTTTGTTCCAATTCGG
TATGCGACTGATGCTCTCTCTCATGAAGTGTTTTTACCTTTTCTTTGTTG
CACTTTCTTCCTTTACTTGTGACCCTTGCGCCCTTTTGCCGCGCCCTTTT
CGCTTGTTCTCTTGTATGTACTTTAACCCTCGTACCCCCTTGTTTTTGCC
ACCTTTCCCATCTGTTTGCCCTTCCCTTCGTTTTCCCTTACACTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_d13.b1 MSMg01no303_d13.b1 CHROMAT_FILE:
MSMg01no303_d13.b1 PHD_FILE: MSMg01no303_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:04 2005
         (653 letters)



>mm_chr11_15815876_15816928
          Length = 1053

 Score = 1249 bits (646), Expect = 0.0
 Identities = 649/650 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctacatctgaccagaatattatcgaagacatataaatatattaagatgtttgat 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 ggaattctacatctgagcagaatattatcgaagacatataaatatattaagatgtttgat 895

                                                                       
Query: 64  taacaatgttttggtttacaataataatttttaaaattaaacaatgatttaacaaaatgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 taacaatgttttggtttacaataataatttttaaaattaaacaatgatttaacaaaatgc 835

                                                                       
Query: 124 ttgcatataataataatacattgtggaagttttatttagtcacaacagagggaataaaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 ttgcatataataataatacattgtggaagttttatttagtcacaacagagggaataaaca 775

                                                                       
Query: 184 aaataagattataaaattttgtaataagtgcaacattttgaggattatgattttgtatgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 aaataagattataaaattttgtaataagtgcaacattttgaggattatgattttgtatgt 715

                                                                       
Query: 244 gttttagcataatgtaaactagctattcagatattctgttggcctcccatcattaaaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gttttagcataatgtaaactagctattcagatattctgttggcctcccatcattaaaact 655

                                                                       
Query: 304 catcactcaaattcacatatgagagtatccctctgttttctttagtacatacatattacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 catcactcaaattcacatatgagagtatccctctgttttctttagtacatacatattacc 595

                                                                       
Query: 364 agcaaaagaaaaaataattaaaattgctaatataaaacattgcaatttcaagtggctacc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agcaaaagaaaaaataattaaaattgctaatataaaacattgcaatttcaagtggctacc 535

                                                                       
Query: 424 tttagatttggtgacttaaattgttgtctcacacaagtgaataggaaagaaaagggcatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tttagatttggtgacttaaattgttgtctcacacaagtgaataggaaagaaaagggcatt 475

                                                                       
Query: 484 aaatgaaggagaagttgggtgtgtgtcaactttactttaatgactaaatgttgttttatc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aaatgaaggagaagttgggtgtgtgtcaactttactttaatgactaaatgttgttttatc 415

                                                                       
Query: 544 atgccttatgaagaattacatattacaattacattctaaccaattttttttgtatttggt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atgccttatgaagaattacatattacaattacattctaaccaattttttttgtatttggt 355

                                                             
Query: 604 aactgaatcttgtttggtataaaatgtatatttttatggtttgtcctgag 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aactgaatcttgtttggtataaaatgtatatttttatggtttgtcctgag 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)