Query= MSMg01no304_k18.b1 MSMg01no304_k18.b1 CHROMAT_FILE:
MSMg01no304_k18.b1 PHD_FILE: MSMg01no304_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:37 2005
(739 letters)
>mm_chr11_106641187_106642324
Length = 1138
Score = 377 bits (195), Expect = e-108
Identities = 295/329 (89%), Gaps = 11/329 (3%)
Strand = Plus / Minus
Query: 416 acagctttatttcagaatggttaaaattaagtctaaatatcttgccagaaaa-tggtgtg 474
|||||||| ||||||||||| || || || |||||||| |||| ||| |||| |||||||
Sbjct: 968 acagctttgtttcagaatggctataagtaggtctaaatgtcttcccaaaaaattggtgtg 909
Query: 475 -gttttgcccaggacaaaagtcttaaagaaagttcgtttaa-tttttggtttttaaaatg 532
|||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct: 908 ttttttgcccaggacaaaagtcttaaaggaagtt-atttaacttttt-gtttttaaaatg 851
Query: 533 ggctttattgttaatgccttctttataaaatgttacaacaaattggaatgtgctgggggt 592
||| |||||||||||||||| |||||||||||||| |||||| | |||||||||||||||
Sbjct: 850 ggc-ttattgttaatgccttatttataaaatgttaaaacaaaatagaatgtgctgggggt 792
Query: 593 gggagctgggcgtgttttccaggg-tgatgacattgaaaactggttcatcctctagttct 651
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 791 gggagctgggcgtgttttccagggctgataacattgaaaactggttcatcctctagt--a 734
Query: 652 ctaagtggctttcaatgccatggctagtcagattcatgatttttatctataggtgata-a 710
|| ||||| |||||||| ||||||||||||||||||||||||||| |||||||| || |
Sbjct: 733 ctgagtggttttcaatggcatggctagtcagattcatgatttttaagtataggtg-taga 675
Query: 711 ttggagcattaattacatattttactgtt 739
|||||||||| ||||||||||||||||||
Sbjct: 674 ttggagcatttattacatattttactgtt 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 739
Length of database: 1138
Length adjustment: 10
Effective length of query: 729
Effective length of database: 1128
Effective search space: 822312
Effective search space used: 822312
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_k18.g1 MSMg01no304_k18.g1 CHROMAT_FILE:
MSMg01no304_k18.g1 PHD_FILE: MSMg01no304_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:38 2005
(727 letters)
>mm_chr11_58143037_58144158
Length = 1122
Score = 1348 bits (697), Expect = 0.0
Identities = 717/727 (98%), Gaps = 7/727 (0%)
Strand = Plus / Plus
Query: 1 cttcagactgtggaaccccgtcctcctccattctcatgcctctagaaacacctaaagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcagactgtggaaccccgtcctcctccattctcatgcctctagaaacacctaaagact 260
Query: 61 ccttcacagataggaaggcagctcttgactaaacagactcttttctttaccgatttacta 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ccttcacagataggaaggcagctcttgactaaacagac-----tctttaccgatttacta 315
Query: 121 aacacgggttatgttcaaccgaacccaatgggaagagaattgggcccggatacgtgtttc 180
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aacacgggctatgttcaacagaacccaatgggaagagaattgggcccggatacgtgtttc 375
Query: 181 atctccagaaaaaaagcctggggccccgaggccgtcagacatttgtaccaagcaagcatc 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 376 atctccagaaaaaaagcctggggccccgaggccgtcagacatttgtaccacgcaagcatc 435
Query: 241 catcctgcatcccatccatggcttcggtccgtcttgcaagccacacatagcactggtatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 catcctgcatcccatccatggcttcggtccgtcttgcaagccacacatagcactggtatc 495
Query: 301 cagaccacccatgaacgaagcagggagctcactgggctaagttcgagcctcctcctccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cagaccacccatgaacgaagcagggagctcactgggctaagttcgagcctcctcctccca 555
Query: 361 ctctaggaaagtgagctaacagtgagatcctctgcattcacgcggtagccggcgtcccgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctctaggaaagtgagctaacagtgagatcctctgcattcacgcggtagccggcgtcccgt 615
Query: 421 gaggccggctacttagcgggagagatggcgcccgctgcaggtgtcgggagaggttcaccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaggccggctacttagcgggagagatggcgcccgctgcaggtgtcgggagaggttcaccc 675
Query: 481 acctgtctcgacctagagtccgccggattcactgaaccgagaaaaaagaaaagaaaagga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 acctgtctcgacctagagtccgccggattcactgaaccgagaaaaaagaaaagaaaagga 735
Query: 541 aaaaaaaaaaatcacttttgaaaaacgacttcgtttttgttagcaatacccagataggag 600
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aaaaaaaaa--tcacttttgaaaaacgacttcgtttttgttagcaatacccagataggag 793
Query: 601 ctagccgaaaccggaagttgcatcacctccggtcgcgccaggcagtgacagtccttagcc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ctagccgaaaccggaagttgcatcacctccggtcgcgccaggcagtgacagtccttagcc 853
Query: 661 ccgcctctgttcctaaagcaacgatggccgctcccgcgtacgacactattgctagcattt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 ccgcctctgttcctaaagcaacgatggccgctcccgcgtacgacactattgctagcattt 913
Query: 721 ctcgaat 727
|||||||
Sbjct: 914 ctcgaat 920
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1122
Length adjustment: 10
Effective length of query: 717
Effective length of database: 1112
Effective search space: 797304
Effective search space used: 797304
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
