BAC Information

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BAC

Clone NameMSMg01-304M12
Chromosome11 (Build37)
Map Location 107,925,818 - 108,015,731
singlet/doubletdoublet
Overlap genePrkca
Upstream geneBptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5
Downstream geneApoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2, E030025P04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304M12.T7 (MSMg01no304_m12.b1)MSMg01-304M12.TJ (MSMg01no304_m12.g1)
ACCAG429958AG429959
length1,3681,359
length of high quality
(start - end)		321 (87 - 407)274 (132 - 405)
definitionCHROMAT_FILE: MSMg01no304_m12.b1 PHD_FILE: MSMg01no304_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:53 2005CHROMAT_FILE: MSMg01no304_m12.g1 PHD_FILE: MSMg01no304_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,015,411 - 108,015,731)(107,925,818 - 107,926,091)
sequence
NNNCCGGCTTTNNNNNNGGCAGTGGGCGCTAAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCACAGGAAGGGCTCTACCATTAAGAACACATATTCAATT
ATGCACCCCGAGAAAAGACGTATGATGCAAATTAAAATATCTGAAATATG
GTTAGCCTACTGTATGTAAACACAGTTAACCTCAGAGTCAGAAGACCTGG
TTTGAAGCCTGAGTTCCGCACTTCCGGCTTCCATCTTGTGCCTCTTGTTT
CTTCCCTTGGGGCTGTGAATGGGGTGGCTGCTGCAGTTGATGTCACCCTC
ACCACCAGTGACAGCAGTAGCAGCTATAAATACTTGTGGTTATTGCTATT
ATTATCACTGTTATTAGTAGCCGGGGCTAACAAGACAGGCTCCATCTGCT
CTTCCCCCTTTGGTAACCACAGTTTCCTGCAGAGGTCTGTGGGGGTGCCT
ATGGATGCCTGGGACAGATTTAGAAAGAGACTGTGATGGCCCAACTCCTG
TCAGACCTTTCAGCCTCCTGTGGACATTAGACTGCTCCCCACTTAGGGGA
GGAGGCCTGGGGATGACTGCTGGAGACATGGAGGTGAAGAACTTGCCCTC
AACCTGCAAACCCCTGCAGCGTACCCAGTGAGCCTCAAGACTCTACTGGC
AGTTCACCCCACAATTTCTACAGGGCAGATTTCAAGAATTCGCTCTCAGC
AGGGCCCCTCTGCTTCTGAGATGCTTATGTAGCAATTTAATATGCAGCTA
GGTATGGAGGACGTTGGCTTGCTCAAGATCAGAGGTGACTAAATGCTGCA
GAATCTCAACTTGTCCCACATCCATCCCTTTCCCTGTGTATGCGTGTCCG
TGGGTGTGCATACGTGTACAGTGGCTATTTCAGAAATGTTCACAATGCAT
GTTGGGATAAAAAATAAAATTATTTTCCTCAGCTTTTTTCCCCTACAATT
TTTTATAAAAAACTCCCTGATATGTATGTTCTCCTTTTTATCTAAAATTG
TTGGTTTTGTTTACCCTCAGTACTTTTTATTTTTTTCTTCTACATCTTCG
GTTACATAATTTTTATTTTATACTTATTTACTTTTTTACATATTTACTAA
TATTTTATTCTCTAAAAATTAATTCATTTCATCGTTTTTTTTCTCACTCA
TGCTCTTATTTAATTTTCATAGACTTTATATATATTCTATTCATAATTTT
TATCTATACACTTCTATCTCTGCTTACACTAATTCTAGTTTGCTTTATTC
GTCCAACATTACTTTATCTACTTTCTCTTTTTATTATTGACNTTAACTTA
CATATCATGAATCATTAAATTTAGTTCAATTGTTAATTTATTTCCATATA
TACATACTATCTATAACA

NNNCCAACCTTNNNNNNACGAAGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAAACCTGCCCTGGAGG
NTTCTCAGAGGACCTAAATCCTTATACTTGAAAGCCTCAGGGTCAGGCTT
TCTGAGTTCCTGGGGCTGTTTTTAATCCAGTGGAGCTCTGGGGCGCGACT
TCCTTGTGTGGCTCCTCCAAGCTGCTTCCTCTGAATACCAAGGAAAATTC
CCTGCTCTTACCATCTGATGTGTTCTCATGAATCATACTTGGAAGCCAGG
CTTGGGTCTAAATGTCACCCGCATGCTGACTACACAGGCAACACTGAATA
CTCTGCTCCAAGGGTAATAAGGCTGGCATCATTATTGTGATCTGAAATTT
CTTAGGAAATTTCTTTTTTTAACTCCATGAAACAGAAAGAAAGAAAGAAA
GAAAGAAAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAGAGACAGAGAGA
GAGGAAGAGAGGNNNANNNNNNNANNNNNNNNNNGNNNNGNNNGNNNNNN
NANNNNNNNNNNTTANNNNTGGNTGTTTATTATNTTATTATAANTCCCGA
GTCGATTTTTCTATAACCTGGACTATTACTGGAATTGTGTCTCCCCTAAA
AGAAAGGTTTGGACTCATTAACTTTTCTCAGAGGGTATATAAACTTAGAT
TTCTCTTCTTGGTGAACTTTTAAATGGTCCAAGCCGTTCTAATATAGAAT
CTCCACGATAAAGTATCTGTACTAACTTGCGGGCAAAGTAATGGGCTTTC
TTTTTTTTTCTTTTTTTTATATTGTCAGAATCCACCACAGTCAATAACAG
GCCAGATGATACTCACACAAATAAAGTTACACATAAATGACACGTTGTTT
ATTGCAAATCGTCTAATAGGATCAGTAAGGTTATAATTTATAATTTANCT
TATAGGTTAACGTTTTTTGATATATTATAACATGGTAATAGTTTCGTAAT
CTTAATTGACAATCCATTCTATATTTTTTAAATCGATATCAATAACATTA
GTGAATTATAATTACGAGAAAAAAAAGCCAAAATTCCTTCATATAAATGT
AAAATTCAATAACTTGACAATAATATAAAAATGTTTCTGGAGTAGTTTAG
TAAAGATATTCTGTTTTATTCGCCCCCAGCAACGGATACACGATATAATT
ATCTAAACTTAAACAATCTCTGTTTTTTAAATTCTCACACCTATTATCTT
AGCGTAACTTCCTGAATTGCTATTTTTCCGAACACTTAATGATACGAAAT
ATATACAATAGAGATGAGTTTTNCCNCNNNTGCGCGTGTCCTCGGGGCAA
ACACTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_m12.b1 MSMg01no304_m12.b1 CHROMAT_FILE:
MSMg01no304_m12.b1 PHD_FILE: MSMg01no304_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:53 2005
         (321 letters)



>mm_chr11_108015211_108015931
          Length = 721

 Score =  605 bits (313), Expect = e-178
 Identities = 319/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacatattcaattatgcaccccgagaaaagacgtatgatgcaaattaaaatatctgaaa 60
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 521 acacatattcaattatgcaccccgagaaaagaagaatgatgcaaattaaaatatctgaaa 462

                                                                       
Query: 61  tatggttagcctactgtatgtaaacacagttaacctcagagtcagaagacctggtttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tatggttagcctactgtatgtaaacacagttaacctcagagtcagaagacctggtttgaa 402

                                                                       
Query: 121 gcctgagttccgcacttccggcttccatcttgtgcctcttgtttcttcccttggggctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gcctgagttccgcacttccggcttccatcttgtgcctcttgtttcttcccttggggctgt 342

                                                                       
Query: 181 gaatggggtggctgctgcagttgatgtcaccctcaccaccagtgacagcagtagcagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaatggggtggctgctgcagttgatgtcaccctcaccaccagtgacagcagtagcagcta 282

                                                                       
Query: 241 taaatacttgtggttattgctattattatcactgttattagtagccggggctaacaagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 taaatacttgtggttattgctattattatcactgttattagtagccggggctaacaagac 222

                                
Query: 301 aggctccatctgctcttcccc 321
           |||||||||||||||||||||
Sbjct: 221 aggctccatctgctcttcccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no304_m12.g1 MSMg01no304_m12.g1 CHROMAT_FILE:
MSMg01no304_m12.g1 PHD_FILE: MSMg01no304_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:53 2005
         (274 letters)



>mm_chr11_107925618_107926291
          Length = 674

 Score =  530 bits (274), Expect = e-155
 Identities = 274/274 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcctcagggtcaggctttctgagttcctggggctgtttttaatccagtggagctctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagcctcagggtcaggctttctgagttcctggggctgtttttaatccagtggagctctgg 260

                                                                       
Query: 61  ggcgcgacttccttgtgtggctcctccaagctgcttcctctgaataccaaggaaaattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcgcgacttccttgtgtggctcctccaagctgcttcctctgaataccaaggaaaattcc 320

                                                                       
Query: 121 ctgctcttaccatctgatgtgttctcatgaatcatacttggaagccaggcttgggtctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgctcttaccatctgatgtgttctcatgaatcatacttggaagccaggcttgggtctaa 380

                                                                       
Query: 181 atgtcacccgcatgctgactacacaggcaacactgaatactctgctccaagggtaataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtcacccgcatgctgactacacaggcaacactgaatactctgctccaagggtaataag 440

                                             
Query: 241 gctggcatcattattgtgatctgaaatttcttag 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 gctggcatcattattgtgatctgaaatttcttag 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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