Query= MSMg01no304_o01.b1 MSMg01no304_o01.b1 CHROMAT_FILE:
MSMg01no304_o01.b1 PHD_FILE: MSMg01no304_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:06 2005
(652 letters)
>mm_chr11_104639556_104640607
Length = 1052
Score = 673 bits (348), Expect = 0.0
Identities = 357/360 (99%)
Strand = Plus / Minus
Query: 293 cagtcatgtaggtctcggggcacctagagtttgtagcctccaccacaagcagggaccaag 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 cagtcatgtaggtctcggggcacctagagtttgtagcctccaccacaagcagggaccaag 993
Query: 353 gaggatgaagggagctagctgatgagattaaggcaggaaattctttgcccagccattgag 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 gaggatgaagggagctagctgatgagattaaggcaggaaattctttgcccagccattgag 933
Query: 413 ttatctggctagttttaaaataatgaaactgtctagtgttttccatccacggggctaagg 472
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 932 ttatctggctagttttaaaataatgaaactgtctagtgttttccatccacagggctaagg 873
Query: 473 tgggctggaagagaaagagggcagctgggacagttgttcagggcttggcaaagctagctg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 tgggctggaagagaaagagggcagctgggacagttgttcagggcttggcaaagctagctg 813
Query: 533 tgaggggctgggggaatggtcccagctcccaggaacaatggccagctggccattggcaga 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tgaggggctgggggaatggtcccagctcccaggaacaatggccagctggccattggcaga 753
Query: 593 gctgagtaagaccagctgcagctgacctcagagccttgccagtactgtgggcagagcacc 652
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 752 gctgattaagaccagctgcagctgacctcggagccttgccagtactgtgggcagagcacc 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_o01.g1 MSMg01no304_o01.g1 CHROMAT_FILE:
MSMg01no304_o01.g1 PHD_FILE: MSMg01no304_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:06 2005
(756 letters)
>mm_chr11_104464008_104465163
Length = 1156
Score = 1284 bits (664), Expect = 0.0
Identities = 734/762 (96%), Gaps = 11/762 (1%)
Strand = Plus / Plus
Query: 1 ttggggtctgtctccagcactgaaaatcggaccttaagcctcaccactgcgcaagatatc 60
||||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||
Sbjct: 196 ttggggtctgtctccagcactgaaaatcggaacaaaagcctcaccactgtgtaagatatc 255
Query: 61 acttaatctcaaactcgttacttggagtttccataggaaaagagagaaattatttgaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 acttaatctcaaactcgttacttggagtttccataggaaaagagagaaattatttgaaga 315
Query: 121 aacaatggctaaaagtttctaatatggaccgtgaaaacaaaccagttatctacctatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aacaatggctaaaagtttctaatatggaccgtgaaaacaaaccagttatctacctatctc 375
Query: 181 cccagaacccaaacagataaaagcaaaagaaaatactagtcaccatagagtgaagtggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cccagaacccaaacagataaaagcaaaagaaaatactagtcaccatagagtgaagtggct 435
Query: 241 taagagaaaaatcacagaggaaggaaaaaaaa-----cctgggagaaactgaatgacaga 295
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 436 taagagaaaaatcaaagaggaaggaaaaaaaaaaaaacctgggagaaactgaatgacaga 495
Query: 296 atattgaaggattaggctataacctacggaataaagtaagtgagttcatagtgatatgaa 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 496 atattgaaggattaggctataacctacggaataaagtaagtgagttcatagtgatacgaa 555
Query: 356 tcaattaattttagaaatagaagcaggacagctcttctttatgtagaatattaattaata 415
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 556 tcaattaattttagaaatagaagcaggacagctcttccttatgtagaatattaattaata 615
Query: 416 atgcttgaaggaaggtggaaagccatgttaaatacatagtagcaagtgagccatgctaaa 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtgcttgaaggaaggtggaaagccatgttaaatacatagtagcaagtgagccatgctaaa 675
Query: 476 tacacagtagcaagtgctgcagtcagaagacagggatggataatggagagagggctcagt 535
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 676 tacacagtagcaagtgctgcagtcagaagacagggatggataatggagagatggctcagt 735
Query: 536 gggcagcaacgccggctgcaaagcttgaaaactcgctaactttactgtacacccgcagtg 595
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 736 gggcagcaacaccggctgcaaagcttgaaaactcgctaactttactgtgcacccgcagtg 795
Query: 596 gctcttttgttctttaagttacacttcacttatttactaatttgtgtgtcatgtacc-cc 654
||||||| ||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 796 gctctttcgttctttaagttacacttcacttatttactaatttgtgtgtcacgt-cctcc 854
Query: 655 cttctccccgaccccccccccccggggggctcattccatgatggcgtgtgtggaggtcag 714
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 855 cttctccccgacccccccccccccaggggctcattccatgatggcgtgtgtggaggtcag 914
Query: 715 aagctatcttgtgggagtctgttctctctttctatcctgtgg 756
||||||||||| ||||||||||||||||| |||||||||
Sbjct: 915 aagctatcttgcgggagtctgttctctct----atcctgtgg 952
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 756
Length of database: 1156
Length adjustment: 10
Effective length of query: 746
Effective length of database: 1146
Effective search space: 854916
Effective search space used: 854916
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
