Query= MSMg01no305_h06.b1 MSMg01no305_h06.b1 CHROMAT_FILE:
MSMg01no305_h06.b1 PHD_FILE: MSMg01no305_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:24 2005
(268 letters)
>mm_chr11_52159037_52159704
Length = 668
Score = 180 bits (93), Expect = 8e-50
Identities = 114/125 (91%), Gaps = 8/125 (6%)
Strand = Plus / Plus
Query: 1 catcatctctctctgaagcctgatctcctggaaggaaggcaaggactttggcatgcctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcatctctctctgaagcctgatctcctggaaggaaggcaaggactttggcatgcctgg 260
Query: 61 tccctccagggtccggcacagaggcctgcccacgcccccctt------agcatcatccct 114
|||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 261 tccctccaaggtccggcacagaggcctgcccatgcccccc--ccccccagcattatccct 318
Query: 115 tgatt 119
|||||
Sbjct: 319 tgatt 323
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no305_h06.g1 MSMg01no305_h06.g1 CHROMAT_FILE:
MSMg01no305_h06.g1 PHD_FILE: MSMg01no305_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:24 2005
(705 letters)
>mm_chr11_52330168_52331272
Length = 1105
Score = 1009 bits (522), Expect = 0.0
Identities = 552/562 (98%)
Strand = Plus / Minus
Query: 143 acaaagctgagtttagagccagcccacccatgggagggccaatctctggagaaaacctta 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 acaaagctgagtttagagccagcccacccatgggagggccaatctctggagaaaacctta 1046
Query: 203 ccaagggaacttttactccctgcaaacaggaaacaaaactaacccaaggggctggagaga 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 ccaagggaacttttactccctgcaaacaggaaacaaaactaacccaaggggctggagaga 986
Query: 263 cagctcaacagttaagagttttggctgttctcccagaggacccgggttttaatttcaatc 322
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 985 cagctcaacagttaagagcactggctgctctcccagaggacccgggttttaatttcaatc 926
Query: 323 acatacatgatggatggctcagaaccatggaactccagttccagggaatccagtgccctc 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 acatacatgatggatggctcagaaccatggaactccagttccagggaatccagtgccctc 866
Query: 383 ttctggcgtccatgggtactgcatgcacacaaagcatagacatacatgcaggcaaagcac 442
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 865 ttctggcgtccatgggtactgcatgcacacaaggcatagacatacatgcaggcaaagcac 806
Query: 443 tgatggccaagaacaggtgaccaccccagctctcactgtttcccaaggacacaaagaagg 502
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 805 tgatggccaagaataggtgaccaccccagctttcactgtttcccaaggacacaaagaagg 746
Query: 503 attgcagattgacagagggagctaaagcccactcctgctggaacctcggtgcagacgaga 562
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attgcagattggcagagggagctaaagcccactcctgctggaacctcggtgcagacgaga 686
Query: 563 ctttcttataacgattttcccatttggattctttctgaagggtagacaagatgactcagt 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctttcttataacgattttcccatttggattctttctgaagggtagacaagatgactcagt 626
Query: 623 gggtaaaggcacttgcggccaagactgactactgtatttgatctctagaacccacatggt 682
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 gggtaaaggcacttgcagccaagactgactactgtatttgatctctagaaaccacatggt 566
Query: 683 ggaaagagaggtctgactctca 704
||||||||||||||||||||||
Sbjct: 565 ggaaagagaggtctgactctca 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
