BAC Information

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BAC

Clone NameMSMg01-305M04
Chromosome11 (Build37)
Map Location 84,437,859 - 84,438,234
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1
Downstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305M04.T7 (MSMg01no305_m04.b1)MSMg01-305M04.TJ (MSMg01no305_m04.g1)
ACCAG430624AG430625
length1,2791,292
length of high quality
(start - end)
413 (44 - 456)421 (73 - 493)
definitionCHROMAT_FILE: MSMg01no305_m04.b1 PHD_FILE: MSMg01no305_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:06 2005CHROMAT_FILE: MSMg01no305_m04.g1 PHD_FILE: MSMg01no305_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCCGCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCTGTGTAGCTAGGCTGGCCTCAAACTCACAAAGATCCACCTGCCTC
TTCTTCCCAGGTGGAAAAAAAATGTTCTTTCTCCCAAACACACTCAATCT
TATTCTCTACCTTTAATATGTGTGTATGTTTCAGCATCTTGTCAAGTTCA
GGTGTTTACTACATCTAGGACAGCTCCTGAGAAGCAACCTCCAGATGCTC
CAATCTCCTCTCACAGACACAGACTTGTTCCTTCTGATCTATCCACAGAC
AGCTCCACAGATCCTGGACAGCAAGGAACAGCCAACTCTCCTAAGACTGG
ACCTACATCCCCATAACCATTCTTCTAAGTTTCCTAGAGACACGTTGCCC
CTTGTGTCAACAGGAAATAGTCAGATATCACAATAACCCTATTCCTGCTT
CATTTTTTTTTCTCCCCCCCCCCTTTTAATTTTTAATTCCACCAAAAAGA
AGAAGGTTAGCATTCTGTCTAAGCTCTGTCCCACATTTACCAGGCAACAG
CCAGGTATGCCGACTCACTATAAAAGGGACCGCTTGGCCCCTCCTTGCTC
TCTTGCTCCTCTCTTCTTTTTCTGTTTCCCTTCCTCCTTCTCCCGATTCC
CCTCTCCCCTCTCTCCACGTGCTCATAGCCGGCCTCTACTCCTTTACTCC
TTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTC
TTCTCTTCTCTTCTCTTCTCTTCTCTCCCTTCCTCTCCCTCTACTACCTT
CTGGACTCCCCTCCCCATGCCCTGAATAAACTCTGTTCTATACTACACCA
TTGTGTGGCTTGTCCCTTCAGGNGTAAAGGATGCCTCAGCATGGGTTTGC
CAAGGCTTTCCCCTTCCCCACACCTCACCACACCCCCGAAAAAAATAACC
CACTTCCTCTTATCTTTTAAATACACCACACCAGGTACTAGGATTAAGGT
ATGTGTTACCCCCTGGCACTCATGTAATTTTACTACCTTTATCCACCCTT
TAAAAAAAAATAAATTTGCCGGCCGGGGATGGCATACCCCTTTTTTTCCT
ATATTGTGAGGCAAAAACCGCCCATTTTTTGATTTGGAACCTCCTCGGCT
TCACAAAGATTTCTTAAAACTCAATTCTCACAAAAATACTTTTTCTCCTT
CCCTCCTCAAATTATATAAATAAAACCCTCAAATTGCTCATCTAATATTT
TTTCTCCTATTTTCCTTCTCCAACATCTG
NNNTTCGAGACGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATGCTAATTTGAGCACCTACCAGGGAT
TTGGATATACTCAGTGGTGGAGCATTTGCCTAGCATATAGGAGACCCTAG
GTTCTAACCCCAATAACACACACACACACATACACACACACACACACACA
CACATACACACACAGAGTGGATATGTTTTGCTACGTTGCAAGAGACTTCC
CTTTTCTTCTTTCAAGTGCCCCAATGACCTTAGGCCCCTCTCCTCCCTCC
TCTATGCACCTCCTGCAGGATGAACAGGCAACCAGGGATCTCCCAGAACC
CAGCTTTGTAAAGACTGGAGAGCTGGTGGCATGGAACCACACTGAATTCC
CTTTTATGATGGAGGTAGGAGAGCACCGGGGCAGGACAAACTCAGCTCCT
CCTTTTTTTTTTCCCCCCCCCCCNANTCNTCTGCCTCTCCCAAAAAAAAG
GGGAGGCCCTCTGCTTCCTCTCTTCCTCCCACCACCTCACCTCATCTCCT
GGCCGCTTACCTCGCTCCAAACTACCTGATCAAAGGCAAGAATTTGGGAG
CCTGTAATGAGCTCCTTCTCCTCGGCTCCCTCTCCACCCGGTCCTCTGCC
CCTTCCTGCCAGGCCATAAATAACTCTTTCCCCAGGGGGAGCCAGGATGG
ATGGGAGATGAAGGCCCTGCATCAGTTCCCTGAGGTTACAGGGCAAGCTA
GAAGGTCCAGAGAGAGGGTTAGAGTGCAGTTGGGGCAAAGGCATTCCTTA
GACCGCCGCACCCCTAAACAGTGACGAGATTTTGCTTTCTCCCTCAACGT
AAGTGTCTGGGAAGAGCAACAGATAAACCAGAACTCATGCAAATCAGCAC
TGTTCGCTAGAACTTTCTGAATGTTGAGCATGCTCTCTGAGCCATCCAAA
GTGGCGCTAGGAACCATGCCTGACAAGGTCCCGCACAAAGGTCATCGTGA
ATCGCATCACCGAAAAAAATTTTTGGTCCCCGGTTTAATCCTGCTTATGA
ACATCTATATAGTCCCACGTGGTCAAAAAATTTGCCTGGTGCTCAATCAA
AAATTTCCAACCAAAGGGGAAAGCTTTTTTCCAAATTTTCCTGGCCACAA
TTCAAGGTGAGTTCCCCCAAATGGAATTTTGTACCCCAACTCCCATTTTC
CCCTGCGTGTATTTTTTTAGGGAATTCCTATAAAGGCTTTACCACATGTA
AATCCACCCCCACTAAAAAGTCGTGTTCATCTTCAAAAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_m04.g1 MSMg01no305_m04.g1 CHROMAT_FILE:
MSMg01no305_m04.g1 PHD_FILE: MSMg01no305_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:06 2005
         (421 letters)



>mm_chr11_84437517_84438337
          Length = 821

 Score =  650 bits (336), Expect = 0.0
 Identities = 368/380 (96%), Gaps = 4/380 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgctaatttgagcacctaccagggatttggatatactcagtggtggagcatttgccta 60
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aatgctaatttgagcacctagtagggatttggatatactcagtggtggagcatttgccta 659

                                                                       
Query: 61  gcatataggagaccctaggttctaaccccaataacacacacacacacatacacacacaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||
Sbjct: 658 gcatataggagaccctaggttctaaccccaataacacacacacacac--acacatacaca 601

                                                                       
Query: 121 cacacacacacatacacacacagagtggatatgttttgctacgttgcaagagacttccct 180
           |||||||||||  ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 600 cacacacacac--acacagacagagtgaatatgttttgctacgttgcaagagacttccct 543

                                                                       
Query: 181 tttcttctttcaagtgccccaatgaccttaggcccctctcctccctcctctatgcacctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tttcttctttcaagtgccccaatgaccttaggcccctctcctccctcctctatgcacctc 483

                                                                       
Query: 241 ctgcaggatgaacaggcaaccagggatctcccagaacccagctttgtaaagactggagag 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 482 ctgcaggatgaacaggcaaccagggatctctcagaacccagctttgtaaagactggagag 423

                                                                       
Query: 301 ctggtggcatggaaccacactgaattcccttttatgatggaggtaggagagcaccggggc 360
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 422 ctggtggcatggaaccacactgaattccctcatatgatggaggtaggagagcaccggggc 363

                               
Query: 361 aggacaaactcagctcctcc 380
           ||||||||||||||||||||
Sbjct: 362 aggacaaactcagctcctcc 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)