Query= MSMg01no306_b23.b1 MSMg01no306_b23.b1 CHROMAT_FILE:
MSMg01no306_b23.b1 PHD_FILE: MSMg01no306_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:48 2005
(692 letters)
>mm_chr11_62188858_62189947
Length = 1090
Score = 1232 bits (637), Expect = 0.0
Identities = 657/665 (98%), Gaps = 4/665 (0%)
Strand = Plus / Minus
Query: 29 acagagaaaccctgtctcgaaaaacaaaaaaacaaaaacaaaaacaaaatattgcacagg 88
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 940 acagagaaaccctgtctcgaaaaacaaaaaaacaaaaacaaaaacaaaagattgcacagg 881
Query: 89 tggtacaaccagaagattctgacaatgacttcctgcttcatctactatctttgtatgcct 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tggtacaaccagaagattctgacaatgacttcctgcttcatctactatctttgtatgcct 821
Query: 149 ctttgtatatcatggccaaatttacttactctgttgttattataagttaatatatatttt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ctttgtatatcatggccaaatttacttactctgttgttattataagttaatatatatttt 761
Query: 209 tttcattttactgccttgaggctgatttatttcatatttttaggtttatacatcatactt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tttcattttactgccttgaggctgatttatttcatatttttaggtttatacatcatactt 701
Query: 269 aatttatcatgttagatgtctggatggcattagttccccgagctgaaaaaatacccacct 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 aatttatcatgttagatgtctggatggcattagttccccgagctgaaaaaatacccacct 641
Query: 329 aaggagctaagggacaattgcttaaacagattgacacagcttcctgcaatgtcgaaattg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aaggagctaagggacaattgcttaaacagattgacacagcttcctgcaatgtcgaaattg 581
Query: 389 gatgtatgctagttatagaaaaatgaagacaataatatatttcagtttatattattattc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gatgtatgctagttatagaaaaatgaagacaataatatatttcagtttatattattattc 521
Query: 449 actgttctttgtaaattttctttgtaagctgagtgcttctgctgtgagcactcttagaat 508
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 520 actgttctttgtaaattttctttgtaagctgagtgcttctgctgtgaggactcttagaat 461
Query: 509 attactggtgatgcacactttattattactagagtttaaactgtgtgtaactagtgtttg 568
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 460 attactggtgatgcacact---ttattactagagtttaaactgtgtgtaactagtgtttg 404
Query: 569 ttgctttccttgttggctcttcgtttcagacaggtttaggaagctctgtatactgcagtt 628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gtgctttccttgttggctcttcgtttcagacaggtttaggaagctctgtatactgcagtt 344
Query: 629 ttacaactactgattgtggatattttttct-aaagtcattattgtcttttaaccttaaaa 687
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 343 ttacaactactgattgtggatattttttctaaaagtcattattgtcttttaaccttaaag 284
Query: 688 ttgta 692
|||||
Sbjct: 283 ttgta 279
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1090
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1080
Effective search space: 736560
Effective search space used: 736560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_b23.g1 MSMg01no306_b23.g1 CHROMAT_FILE:
MSMg01no306_b23.g1 PHD_FILE: MSMg01no306_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:48 2005
(605 letters)
>mm_chr11_62004699_62005703
Length = 1005
Score = 1077 bits (557), Expect = 0.0
Identities = 590/613 (96%), Gaps = 20/613 (3%)
Strand = Plus / Plus
Query: 1 tttgcttcccaatgtctggaacctcacatgaccagagactgggacagttcccgtgtgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tttgcttcccaatgtctggaacctcacatgaccagagactgggacagttccagtgtgctg 260
Query: 61 ggctcttccatagtttcccacatcttggaggtccagacagagatttccaagagtcctggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctcttccatagtttcccacatcttggaggtccagacagagatttccaagagtcctggg 320
Query: 121 tagaaacttaaaaattatttattacctgccagggaagtcccagcagtcactttctgcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaaacttaaaaattatttattacctgccagggaagtcccagcagtcactttctgcata 380
Query: 181 tgcaaatcgattacttaagatccaaagaaagtgacactgggcttctaaactgtacccatg 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tgcaaatcgattacttaagatccaaagaaagtgacactgggcttctaaattgtacccatg 440
Query: 241 attgaggagaggcatcttcatccctcatgagactgaacatcacctcctgtgttttaggca 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgagaagaggcatcttcatccctcatgagactgaacatcacctcctgtgttttaggca 500
Query: 301 gcagtgtctctttggtgtgtcactggttcattctgccatttttgactcgacctatcctat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagtgtctctttggtgtgtcactggttcattctgccatttttgactcgacctatcctat 560
Query: 361 caggatatattctagtcgttactcatttgctgcatatattgtttttaatttttgtcatac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggatatattctagtcgttactcatttgctgcatatattgtttttaatttttgtcatac 620
Query: 421 agaaaattatagattcagacttctcaggccttttatacatttcagttttgtgcttttctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaaattatagattcagacttctcaggccttttatacatttcagttttgtgcttttctt 680
Query: 481 gtttatttgttgttctgttgttctgttgttgttgttgttgttgttgttgttgttgttgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttatttgttgttctgttgttctgttgttgttgttgttgttgttgtt------------ 728
Query: 541 t--------ggtttctctgtgtagccctgggtggaacttactcagtagaccaggctggcc 592
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tcaagacaaggtttctctgtgtagccctgggtggaacttactcagtagaccaggctggcc 788
Query: 593 ttgaactcacaga 605
|||||||||||||
Sbjct: 789 ttgaactcacaga 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
