Query= MSMg01no307_k22.b1 MSMg01no307_k22.b1 CHROMAT_FILE:
MSMg01no307_k22.b1 PHD_FILE: MSMg01no307_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:48 2005
(707 letters)
>mm_chr11_100156015_100157121
Length = 1107
Score = 760 bits (393), Expect = 0.0
Identities = 488/529 (92%), Gaps = 23/529 (4%)
Strand = Plus / Minus
Query: 5 gaattccatacaactttccccaaa--cataaaaatatcctgagctcaggatgtagctagc 62
|||||||||||||||||||| || |||||||||| ||||||||||||||| ||||
Sbjct: 521 gaattccatacaactttccc--aagtcataaaaataacctgagctcaggatg----tagc 468
Query: 63 tcagtggtggacctcctgcccagcatgctaaaggcccccgcataacaaaaacagaaacaa 122
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 467 tcagtggtggaccccctgcccagcatgctaaaggcccccgcgtaacaaaaacagaaacaa 408
Query: 123 atgtccccaaatcagaaa--atactgttccttgggtgttttaagtgaatgacggtctgat 180
||||||||||||| |||| || |||||||||| ||||||||| ||||||| |||||||
Sbjct: 407 atgtccccaaatcggaaaccat--tgttccttggatgttttaagagaatgactgtctgat 350
Query: 181 gttggagtgttcaaggcagtaatctgcattcagcccgtggagagcaaggaggaaggaaga 240
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 349 gttggagtgttcaaggcagtaatctgcatccagccggtggagagcaaggaggaaggaaga 290
Query: 241 tcaggacgctgggggcaaca----cgatgccttattctcaataaacgacaacaaaagaaa 296
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 289 tcaggacgctgggggcaacacgatcgatgccttgttctcaataaacgacaacaaaagaaa 230
Query: 297 acgctcaaacaaaagttgggcttattggtaatttcctgtagctggcaggacttgagaggc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 acgctcaaacaaaagttgggcttattggtaatttcctgtagctggcaggacttgagaggc 170
Query: 357 ttagctgaagcagaaagatcccccacatttgaggccagcctgaacagtacagaaaaagat 416
||| |||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct: 169 ttaactgaagcagaaagatctcctaaatttgaggccagcctgaacagtacagaaaaagat 110
Query: 417 tcccacccccttttaaaagataaactatctaaaatgtaaaaaaaac-----caaaaacca 471
||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||
Sbjct: 109 tcccacccccttttaaaagctaaactatctaaaatgtaaaaaaaaaaaaaacaaaaaaca 50
Query: 472 aaaaacaaa-caaa-caaaaaaaccaaccaaacaaaaaaccaaaaaaca 518
||||||||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct: 49 aaaaacaaaacaaaacaaaaaacccaaccaaacaaaaaaccaaaaaaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no307_k22.g1 MSMg01no307_k22.g1 CHROMAT_FILE:
MSMg01no307_k22.g1 PHD_FILE: MSMg01no307_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:48 2005
(312 letters)
>mm_chr11_100124357_100125068
Length = 712
Score = 553 bits (286), Expect = e-162
Identities = 304/312 (97%), Gaps = 4/312 (1%)
Strand = Plus / Plus
Query: 1 ctaatctccccccccccatgtcctatacacaggacaggattagactcttaccttctcggg 60
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ctaatct----cccccgatgtcctatacacaggacaggattagactcttaccttctcggg 260
Query: 61 agggctgcgaagccagggatgaggagtattgagtagccaggctgcggggagaaggggacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggctgcgaagccagggatgaggagtattgagtagccaggctgcggggagaaggggacc 320
Query: 121 tgtcagcccagaggtgccacaagcaaggagaccctgggagcacgtctgggaaggataaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcagcccagaggtgccacaagcaaggagaccctgggagcacgtctgggaaggataaac 380
Query: 181 agctgaagaggccccaaaagagtaagagagatcccacaacttggataatcacagctagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgaagaggccccaaaagagtaagagagatcccacaacttggataatcacagctagga 440
Query: 241 gttcacagagaacagcacaagccaaggatcagatcccataggctcctcaagccaggaagg 300
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 gttcacagaggacagcacaagccaaggatcagatcccataggctcctcaaaccaggaagg 500
Query: 301 ataaaagaaata 312
| ||||||||||
Sbjct: 501 aaaaaagaaata 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
