BAC Information

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BAC

Clone NameMSMg01-308O13
Chromosome11 (Build37)
Map Location 101,528,669 - 101,529,010
singlet/doubletsinglet
Overlap geneArl4d, LOC100038842
Upstream geneD11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1
Downstream geneDhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308O13.T7 (MSMg01no308_o13.b1)MSMg01-308O13.TJ (MSMg01no308_o13.g1)
ACCAG432852AG432853
length789741
length of high quality
(start - end)		346 (45 - 390)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no308_o13.b1 PHD_FILE: MSMg01no308_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:21 2005CHROMAT_FILE: MSMg01no308_o13.g1 PHD_FILE: MSMg01no308_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGCATTTTCACAGACACAGAACAGCTGTGAGAAGAGCAGCTGAG
GAGACCCCTCTCCTCGACTGTGCAGATGTTCTCAATTCACCCCCAAATGC
ACTCTCTGGATAACCTTCTACACACCCTCCCCCTGCATAGATAAAAATAT
ATCTCCAAATAAAATGCCAGGGAAGGACAGGAGAGCCAGGGCCGAGGTAG
GAGGTAGAGTTAGCATTTACATCTTTCTCCGGTCTTGCAGCCCCTCCCTA
CCCTCTACAGGTGAAGGGCAATGATTACACTTCATCTTCCCTCCCCCCTG
CGGCGCACAGGGTCACCTATGCTCCTTCAGTCCTTTGCGGTGGACAGATC
CAGTACCCAGGCTGCCTCCCCACCCCACGAACCTGCCTGACTATAATGTG
TACTGACCCCCTAGCAGGCACGTTAGGGGTAGCTTCGGTTCTACGTCTCT
TCCCGCTCGATCGAAGTGCCTTCTTCCTCTTCATGATCATTTTCATACCA
CTGTCTCACGTCCTGTTTTGTATACCCAGACCGATTCACAGTACTTGCAC
CCCCATCTCTTTGACTATATCGCTGCCTAAATGCTTATCTCCTTTTTACT
TCTCTTCCTTCTTCCTCAACCTTCGCCATTTACTTCAATTGCCCCCCCCT
TTATATTCCTCCCCTCCGCTTACCCTCTTTTTCTTTTCTCCCTTCCTCCT
CCTCCTTCTTTTATTTTTTCTCCCTTTTCACATACTCTA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACTTGGGCTTAGATAGAGCACCACTTT
ATTTTTTTAATGTGCTTTTGTCCTTTACCTGCATGTATAAGTGTGAGGGT
AATGGGTTCCCCTGGAATTGAAGTGAACAAAAAAATGTGAGCTGCCACAT
GGATGCTAGGATTTGAACCTACATCCTCTGGAAGAGCAGCCAGTGCTCTT
AACAGCTGAGCCATCTCTCCAGCCTTTCCCCAACCCCCAAAGTACCTACT
CTTAACCACCCGAAATCTCTCTATTCCCAAGAAGGAGATTTGACTGTGTA
TGTTCAGCCTACTTCTGTAGACTGCCGCAAATAAACCAACAAAACTACCT
GAATCTGGGATTACCCCCCCCGCTTCTTGAACATTATCCTCTTCTAGGCA
AGTTGCCATTTCCTCGTTATCTGAAATCAATTCCTTGTCACTTAGGAAAG
CTTCCTCATTCCCACACTGGTGACTCCTCTGTTTGGAAGGTGGAATAAAA
TTGGAATCCTGGGAGTTTGCATTTGCAGTTGACCCTTGGGCAGCACTGTG
CTGTGAAGAGAACATGCTGCCAGAGCATCTTGGATCCTCACTAAACTGAT
GCTCCTGAGATGTCTCTATCATGATCACCTCATTATTGCAGTCACTGCTG
CTACCCTTCCATGGTGCTTGGGACTCCTCCGCTTTCTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_o13.b1 MSMg01no308_o13.b1 CHROMAT_FILE:
MSMg01no308_o13.b1 PHD_FILE: MSMg01no308_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:21 2005
         (346 letters)



>mm_chr11_101528465_101529210
          Length = 746

 Score =  615 bits (318), Expect = e-180
 Identities = 336/342 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttggcattttcacagacacagaacagctgtgagaagagcagctgaggagacccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaattcttggcattttcacagacacagaacagctgtgagaagagcagctgaggagacccc 487

                                                                       
Query: 65  tctcctcgactgtgcagatgttctcaattcacccccaaatgcactctctggataaccttc 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tctcctcgactgtggagatgttctcaattcacccccaaatgcactctctggataaccttc 427

                                                                       
Query: 125 tacacaccctccccctgcatagataaaaatatatctccaaataaaatgccagggaaggac 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacacaccctccccctgcaaagataaaaatatatctccaaataaaatgccagggaaggac 367

                                                                       
Query: 185 aggagagccagggccgaggtaggaggtagagttagcatttacatctttctccggtcttgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aggagagccagggccgaggtaggaggtagagttagcatttacatctttctccggtcttgc 307

                                                                       
Query: 245 agcccctccctaccctctacaggtgaagggcaatgattacacttcatcttccctcccccc 304
           |||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||
Sbjct: 306 agcccctccctaccctcttcaggtgaagggcaatgaagacacttcatcttccctcccccc 247

                                                     
Query: 305 tgcggcgcacagggtcacctatgctccttcagtcctttgcgg 346
           |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 246 tgcggcgcacagggccacctatgctccttcagtcctttgcgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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