Query= MSMg01no309_g01.b1 MSMg01no309_g01.b1 CHROMAT_FILE:
MSMg01no309_g01.b1 PHD_FILE: MSMg01no309_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:56 2005
(279 letters)
>mm_chr11_64986179_64986857
Length = 679
Score = 524 bits (271), Expect = e-153
Identities = 274/275 (99%)
Strand = Plus / Plus
Query: 5 gaattcacttgtgtccgaattgttacattttactgatgttaaccatgaccttgtaattat 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttgtgtcggaattgttacattttactgatgttaaccatgaccttgtaattat 264
Query: 65 gcatgagttgtacaacagcccccaatgtacgcgaagaacaatgtgagagaaggcagagcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatgagttgtacaacagcccccaatgtacgcgaagaacaatgtgagagaaggcagagcc 324
Query: 125 accccacagagaaaaagcagttctcatctaaaccaggtttggggacctctgtctggttca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accccacagagaaaaagcagttctcatctaaaccaggtttggggacctctgtctggttca 384
Query: 185 aaggtcatccattagccccacagctcctccgtgggatcacacattctccaatgggggtgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggtcatccattagccccacagctcctccgtgggatcacacattctccaatgggggtgg 444
Query: 245 cggggggacagatggaaatatccttgagtgtgaga 279
|||||||||||||||||||||||||||||||||||
Sbjct: 445 cggggggacagatggaaatatccttgagtgtgaga 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no309_g01.g1 MSMg01no309_g01.g1 CHROMAT_FILE:
MSMg01no309_g01.g1 PHD_FILE: MSMg01no309_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:57 2005
(621 letters)
>mm_chr11_65068309_65069325
Length = 1017
Score = 1139 bits (589), Expect = 0.0
Identities = 612/621 (98%), Gaps = 4/621 (0%)
Strand = Plus / Minus
Query: 1 cttttgaggcatgaattagtcttcttcaaatgttttgacaaaccgagagcgtggtgctta 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 817 cttttgaggcatgaattagtcttcttcaaatgttttgacaaaccgagagtgtggtgctta 758
Query: 61 ggggaaagaacagcttcgcagtgtttgtgtgaacagacatctctttgaaacaacttgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggggaaagaacagcttcgcagtgtttgtgtgaacagacatctctttgaaacaacttgagc 698
Query: 121 cttcgcgtgaggctaggtcattgaagtaacggcttgaggatcgaaggccacactctgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 cttcgcgtgaggctaggtcattgaagtaacggcttgaggatcgaaggccacactctgttg 638
Query: 181 gtattctgtttgtgccgatcctccagatgcctgagctagaagcgggcctaagcaatgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gtattctgtttgtgccgatcctccagatgcctgagctagaagcgggcctaagcaatgtct 578
Query: 241 cctaatctcttcgaaaggaggcagagagtcatggcacccctgaggctcaggaaaggacag 300
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 577 cctaatctc-ccgaaaggaggcagagagtcagggcacccctgaggctcaggaaaggacag 519
Query: 301 agtgcacctggccttaccctttctgtgaacatgtgcctgactatgccagccactaagcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agtgcacctggccttaccctttctgtgaacatgtgcctgactatgccagccactaagcct 459
Query: 361 agccgcaccccctgggtccccctgtgcaacaagcaggcaatccaaagtcttgcagggaac 420
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agccgcaccccctgagt---cctgtgcaacaagcaggcaatccaaagtcttgcagggaac 402
Query: 421 agttattggtgtctggtgcccggaggtaacaagcgggctgggatcagcctagacacaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agttattggtgtctggtgcccggaggtaacaagcgggctgggatcagcctagacacaaag 342
Query: 481 ataccctttctctcaggcttgtgattagtaagcttatctgggattgaaacaggtaatcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ataccctttctctcaggcttgtgattagtaagcttatctgggattgaaacaggtaatcta 282
Query: 541 taacctatccattccagttccctggctttgtatgggctaccccactttcactgttctgag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 taacctatccattccagttccctggctttgtatgggctaccccactttcactgttctgag 222
Query: 601 caataaatctttatgccccaa 621
||||| |||||||||||||||
Sbjct: 221 caatatatctttatgccccaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1017
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1007
Effective search space: 615277
Effective search space used: 615277
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
