Query= MSMg01no311_j05.b1 MSMg01no311_j05.b1 CHROMAT_FILE:
MSMg01no311_j05.b1 PHD_FILE: MSMg01no311_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:27 2005
(322 letters)
>mm_chr11_92639204_92639925
Length = 722
Score = 617 bits (319), Expect = 0.0
Identities = 319/319 (100%)
Strand = Plus / Minus
Query: 4 ggaattcttttctttacaatgtgctactttagaaatctcagcttacatctttatccattc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggaattcttttctttacaatgtgctactttagaaatctcagcttacatctttatccattc 261
Query: 64 attcatctattaagtctgggttcaagctcgagatggttcagcaggtcgcagcatcactta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 attcatctattaagtctgggttcaagctcgagatggttcagcaggtcgcagcatcactta 201
Query: 124 gctattttctttatttacatttcaaaggttatctcctttcctcatttcccctccaaaatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gctattttctttatttacatttcaaaggttatctcctttcctcatttcccctccaaaatc 141
Query: 184 cccctatcccatccctcctccccctgcccaccaacccacccacttctgcttccctgtcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 cccctatcccatccctcctccccctgcccaccaacccacccacttctgcttccctgtcct 81
Query: 244 ggcattaccctacactggggcatcgagccgtcacaaaaccaagtgcctttcctcccattg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ggcattaccctacactggggcatcgagccgtcacaaaaccaagtgcctttcctcccattg 21
Query: 304 atgtctgacaaggccatac 322
|||||||||||||||||||
Sbjct: 20 atgtctgacaaggccatac 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no311_j05.g1 MSMg01no311_j05.g1 CHROMAT_FILE:
MSMg01no311_j05.g1 PHD_FILE: MSMg01no311_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:28 2005
(197 letters)
>mm_chr11_92491511_92492103
Length = 593
Score = 337 bits (174), Expect = 4e-97
Identities = 190/196 (96%), Gaps = 4/196 (2%)
Strand = Plus / Plus
Query: 1 ccagtgggtgttcactcacattaaggagaaatctgaattagcttgatgctgacatctgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ccagtgggtgttcactcacattaaggagaaatctgaattagcttgatgctgacatctaat 260
Query: 61 tacattgttatccctttcttcacaaaaatgaccaaacattcgtctcagcagctgatgcta 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tacattgttatccctttcttcacaaaactgaccaaacattcgtctcagcagctgatgcta 320
Query: 121 ctgttttttgctcacattatgaaatttagtctcccaggaatctcancaatgttanncttg 180
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 321 ctgttttttgctcacattatgaaatttagtctcccaggaatctca-caatgtta--cttg 377
Query: 181 agaaaccnaaggtccc 196
||||||| ||||||||
Sbjct: 378 agaaacc-aaggtccc 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 593
Length adjustment: 8
Effective length of query: 189
Effective length of database: 585
Effective search space: 110565
Effective search space used: 110565
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
