BAC Information

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BAC

Clone NameMSMg01-311J14
Chromosome11 (Build37)
Map Location 19,019,402 - 19,019,690
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627696, LOC627716, LOC665796, Meis1
Downstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2, Actr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311J14.T7 (MSMg01no311_j14.b1)MSMg01-311J14.TJ (MSMg01no311_j14.g1)
ACCAG434056AG434057
length760751
length of high quality
(start - end)
104 (126 - 229)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no311_j14.b1 PHD_FILE: MSMg01no311_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:29 2005CHROMAT_FILE: MSMg01no311_j14.g1 PHD_FILE: MSMg01no311_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCAT
AAGGAAAGCATTGATTGAACCAAAATTTCCTTATGGGCCAGTGCCACATA
TATTAGGGCATTTATAGGGTGAGGTGCCCCAAATGCCTGTCTTCATTTGC
ACTTCTCTCTTCCTCATTATTTCTGTGATGGAGAAAATGCGTTCCCATGT
GAGCACACACACACACACACACACACACACACACACACACACACACACAC
ACACATTAATGAAACTGTTTCCAGACACATGAATCCAGCAATTTTATGCC
TCTGCTATTAGCCCTTTTTTAACATTTTCTAATTAAGCTAGTGTGACATG
ATTTTTAATGACTTCCCAAGACAGACCCCGATGGTGATATGTTGGTTTTT
TGTGTTGNNCCCCCCCCCTCAANNCAATTTTAAAAATTGGGGGTTGTTGG
GGGGAACCCACTTCTAATACTTTCTCCTTCAACAATATTTTAACAACCTT
GTCACACTATTCCTTGTGCATCTTACTTAAAACCTCCTCTTCCTCATCAC
CTTTTACCCAACTATCATTTTCTCTTACCTTTTCTTCCCCAACTATTAAT
CTTCATTTTTTTCTATCACTTCTTTTAACTATATCTCTCCTTGTTTTATC
TATCTATTCAATACTTTCATTCCTTTGTCTTCTTTTCTCTCCCCTTATTA
TTCCATTTTATTCCTTATATCATCATTATTTATGCTTAATATCCTCTTTC
CTTTTCTCTG
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCGGTCTGTGTACAGCGAAGG
GTATAATTTTGTGCCCTACTCTTTGGTTTATCACTGAGCTGATATTATCT
AAGTTTTCTTTAGGATGCTTCCCAGAAGTGAATGGATGAAATAATGAAGC
GGGAAGCTGGGGAGCCCCTGAGCTGAAGGGCCTGGCCCTTCTGCTCCCTC
TCTTGAGAAAATGGGACTGTCAGAGAACAGTGAGCCTCATTTTTCTCTGC
ACAGGAAAAGTATACTAAATCTGTTGTTTTTTCTTTTTGTCCTTCCCTTC
CCCCCCCCCCCCTTTAGAGATAGCGTCCNNNACCGAATTCCTTGGNTGTT
TTAAATTGATGTGTGGAGCCCCCCCCCTCATATCCCAATTTNAAAGCGTG
GCTCGCCTTGGGGTCTTCTTTTTTTCCCCCCCTTGCCTTCTCCCCTCCTT
TCCTCCCCTGCTGCTCCCTACTTCTTCCAGGCCTTTCTGTTTACTTATAG
GATTCTTCACACACTGTTACTGCTCTCTGACTACCTTCGTCTACACTTAC
CTTGTCCCTTATTTCTTTTGATCTTCTTTTTTAATCTCTCTCTTTCCAAC
ACTGTGTTTTCCAAATGGCATTTTCTTTTTTTCCCCTACTTTGTTCCCTA
AAATTGTTTTTATTTCCAATACCCCCCTTTTCAATTTTTTTATCTATTCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_j14.g1 MSMg01no311_j14.g1 CHROMAT_FILE:
MSMg01no311_j14.g1 PHD_FILE: MSMg01no311_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:29 2005
         (286 letters)



>mm_chr11_19019202_19019887
          Length = 686

 Score =  485 bits (251), Expect = e-141
 Identities = 279/289 (96%), Gaps = 3/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcggtctgtgtacagcgaagggtataattttgtgccctactctttggtttatcactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcggtctgtgtacagcgaagggtataattttgtgccctactctttggtttatcactg 260

                                                                       
Query: 61  agctgatattatctaagttttctttaggatgcttcccagaagtgaatggatgaaataatg 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgatattatctaagttttccttaggatgcttcccagaagtgaatggatgaaataatg 320

                                                                       
Query: 121 aagcgggaagctggggagcccctgagctgaagggcctggcccttctgctccctctcttga 180
           ||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||
Sbjct: 321 aagcgggaagctggggagcccccaagctgaagtgcctggcccttctgctccctctcttga 380

                                                                       
Query: 181 gaaaatgggactgtcagagaacagtgagcctcatttttctctgcacaggaaaagtatact 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaatgggactgtcagagaacagtgaacctcatttttctctgcacaggaaaagtatact 440

                                                            
Query: 241 aaatctgttgttttttctttttgtccttcccttcccc-cc--ccccccc 286
           ||||||||||  ||||||||||||||||||||||||| ||  |||||||
Sbjct: 441 aaatctgttgacttttctttttgtccttcccttccccaccttccccccc 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)