TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTTCTTTCTGTCAGCTGGCAAGCTGCCTAAAAATGGTGGAGGA
CTTGGAAGAGAGACATAATGTTTCCCTTAAAATAAGGCTTTATTGAAAGC
AGGGCCAGTGGCTAAAGTTAGTCCTTGTTTTTTTGTTTGTTTGTGTTTGT
TTGTTTGTCTCCCCTTTTTCCCTTCCTCTCTTTCTCTCTTTTCCCCCTTA
TTTACTTTTCAATCTTCTACTTACCTCATTCTTATATTTTTCTCACACTC
TTACCTTTCTCCCACCTCAAATTTTTTTTTTTTTCCAAACCTTCATCCTT
TAATCCATTTAATTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCTTTTT
TTTATTTTATTTTTTTTTTTTTGTTGTTGTGNACCTCTTGTGTTAAAAAA
AAAAAAAAAAATACCTTTCTGTTTCCCATATTACCTAATTTTTTTTCTCT
CCCTCATATCCTTTTATCTTATCTCATCTTTATCCATTTCCCTTATCTAT
CTCCCCCTATTTTTCCTACTCCCTCTTTTATCCTCCTTCCCCCTCATTTT
TCCTCCTCTTTTTACTTTTTTTTCCCATTCCCCTTCATTTCTTACTCTCT
TCATTTTCCCTTTCCTCCATTTCCTTTTTTTTTACTTCCTCCCTCCCCCG
CTCTGTTTACTCTTCTCTACTCCTTTCCACTTTTCTTGTTTATAATTTTC
CCTATACTTCTCCTAACTTCTTTTTCTCCCTCTCCCCCCTCTACTTTTAA
CTCCTATTTTCCTTTCTTTCCTTTTTTTCCACTTTTCCTCTCTTTTTCCC
TCTTTTC

TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTGGTTGTCAGGCAAGTTCTTT
CAGCTGCTGAACCTTAGCAGCTCTGTGTCAAAATTTTAATTCAGTTGTTT
ACTACCCATAACTCATCTGTTATTTTAACATGTGAAAGCCCATGTTATTC
TTGACAAAGTTCCTGAGAGCTTGGTATGATCTATTTCTTTCAATACACCA
TGTTCTGTGTTTCCTTTAAATAGCTTATCCTCAGGGTTTGTCTGGAAACT
TTTGTTTATTTCATTCAGAGGTATCTTCAGGGCTCCTGACCAAATCACTG
AAATGTCACTCCTGATTTTTTTTGCCCGCCCGCCCCCCTTTTTCAGTATA
ATAAGTCCTGTTTTCTACCCCCCCCTTCAAAACATCATGAGAAATATTCC
CGGCTGCATTTACTTGTCCTGGATGGCTCATTGATGGGATTTGTTGAAGC
ATTTCTTATGTTATTTGCATTTTGACTCCTGTAAATAATCACATCTCGTT
TTCCTGTGTTTTTTTCCAATCCTTTTTCTATAATAAATTTACTATTTTTT
CCTCCCCTTTATCTCTATAATTCCTTTCATCTTTATCAAACATTCTTTTT
TTATCCTCCCTTTTCCTCTCTTTTCTTTCTTCCTATCCCCCCCTTATTTT
TTTCCCCATCTTTTTCACTTTCTTTGATATTATTATTCATTT

Query= MSMg01no311_k11.b1 MSMg01no311_k11.b1 CHROMAT_FILE:
MSMg01no311_k11.b1 PHD_FILE: MSMg01no311_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:34 2005
         (165 letters)



>mm_chr11_24744061_24744625
          Length = 565

 Score =  255 bits (132), Expect = 8e-73
 Identities = 141/144 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttctttctgtcagctggcaagctgcctaaaaatggtggaggacttggaagag 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttcttgctgtcagctggcaagctgcctaaaaatggtggaggacttggaagag 264

                                                                       
Query: 65  agacataatgtttcccttaaaataaggctttattgaaagcagggccagtggctaaagtta 124
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacataatgtttctattaaaataaggctttattgaaagcagggccagtggctaaagtta 324

                                   
Query: 125 gtccttgtttttttgtttgtttgt 148
           ||||||||||||||||||||||||
Sbjct: 325 gtccttgtttttttgtttgtttgt 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no311_k11.g1 MSMg01no311_k11.g1 CHROMAT_FILE:
MSMg01no311_k11.g1 PHD_FILE: MSMg01no311_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:34 2005
         (288 letters)



>mm_chr11_24904852_24905539
          Length = 688

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactggttgtcaggcaagttctttcagctgctgaaccttagcagctctgtgtcaaaattt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 488 aactggttgtcaggcaagttctttcagctgctgaaccttaccagctctgtgtcaaaattt 429

                                                                       
Query: 61  taattcagttgtttactacccataactcatctgttattttaacatgtgaaagcccatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 taattcagttgtttactacccataactcatctgttattttaacatgtgaaagcccatgtt 369

                                                                       
Query: 121 attcttgacaaagttcctgagagcttggtatgatctatttctttcaatacaccatgttct 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 368 attcttgacaaagttcctgagagctcggtatgatctatttctttcaatacaccatgttct 309

                                                                       
Query: 181 gtgtttcctttaaatagcttatcctcagggtttgtctggaaacttttgtttatttcattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtgtttcctttaaatagcttatcctcagggtttgtctggaaacttttgtttatttcattc 249

                                                           
Query: 241 agaggtatcttcagggctcctgaccaaatcactgaaatgtcactcctg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agaggtatcttcagggctcctgaccaaatcactgaaatgtcactcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)