Query= MSMg01no311_l08.b1 MSMg01no311_l08.b1 CHROMAT_FILE:
MSMg01no311_l08.b1 PHD_FILE: MSMg01no311_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:38 2005
(248 letters)
>mm_chr11_6955138_6955783
Length = 646
Score = 418 bits (216), Expect = e-121
Identities = 237/244 (97%), Gaps = 2/244 (0%)
Strand = Plus / Minus
Query: 5 gaattcaagacctcagagactcctgcccggccccttagagctaccgccctctgttctctt 64
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gaattcaggccctcagagactcctgcccggccccttagagctaccgccctctgttctctt 387
Query: 65 cctgtagtaccccacacgcacctgatcaggctccagcacgctgtcttctctggaacggga 124
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 386 cctgtagtaccccacacgcacctgctcaggctccagcacgctgtcttctctggaacgg-a 328
Query: 125 aaaggatcttgtcattttctggctatgagatactcagcaacttcctggtgcatcaaagca 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 327 aaaggatcttgtcattttctggctctgagatactcagcaacttcctggtgcatcaaagca 268
Query: 185 tcccctactgtgtgtgtttgacaggggccatgccccagtggaggaagaaaacaaagaata 244
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 267 tccc-tactgtgtgtgtttgacagggtccatgccccagtggaggaagaaaacaaagaata 209
Query: 245 aata 248
||||
Sbjct: 208 aata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 646
Length adjustment: 9
Effective length of query: 239
Effective length of database: 637
Effective search space: 152243
Effective search space used: 152243
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no311_l08.g1 MSMg01no311_l08.g1 CHROMAT_FILE:
MSMg01no311_l08.g1 PHD_FILE: MSMg01no311_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:38 2005
(290 letters)
>mm_chr11_6894131_6894820
Length = 690
Score = 545 bits (282), Expect = e-160
Identities = 288/290 (99%)
Strand = Plus / Plus
Query: 1 atcctgtctttggagactgtatgtcctggactataaataaagaagggccttggaagcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcctgtctttggagactgtatgtcctggactataaataaagaagggccttggaagcttg 260
Query: 61 gtcatcgcttggctcacgtgggggaagttaggctctaagaactacagtgatgtgactgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcatcgcttggctcacgtgggggaagttaggctctaagaactacagtgatgtgactgaa 320
Query: 121 taatgttctgtgagatgcagcttctccctgccagaatgagtgagaaacgtggaatgtaca 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattttctgtgagatgcagcttctccctgccagaatgagtgagaaacgtggaatgtaca 380
Query: 181 aaatagggattttcaaacaaacagtggtgctgagtctgacttagaaaagacagaggagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatagggattttcaaacaaacagtggtgctgagtctgacttagaaaagacagaggagtg 440
Query: 241 gcatccatcctatcggcaaggacagagctgtgtgtgctgcactcttactg 290
|||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatccatcctagcggcaaggacagagctgtgtgtgctgcactcttactg 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
