BAC Information

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BAC

Clone NameMSMg01-312G17
Chromosome11 (Build37)
Map Location 113,654,218 - 113,654,923
singlet/doubletsinglet
Overlap geneSdk2
Upstream gene2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4
Downstream geneLOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312G17.T7 (MSMg01no312_g17.b1)MSMg01-312G17.TJ (MSMg01no312_g17.g1)
ACCAG434642AG434643
length7501,280
length of high quality
(start - end)
709 (40 - 748)---
definitionCHROMAT_FILE: MSMg01no312_g17.b1 PHD_FILE: MSMg01no312_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:29 2005CHROMAT_FILE: MSMg01no312_g17.g1 PHD_FILE: MSMg01no312_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TCCACATAACCCTGGGCTCTAATCTGGGTCTTGATACTAACAAGCAAGAA
AAAGGAGCATCCCAGCTAAGTGGGAGAATGGACCTGGGAAGGAATGGCTG
GCTGTGTGGTCTGATGGGTACCAATTCTCTCCCCACTCTCCCCCCACATC
TCTTTGCCCTCAGGAGGGAATACCAAGTCGGGAGCGCTCGGCCACGGGGA
GATGCTAAGCTTGGATGAAAGCAGTTTCCCTGCTCTGGAGCTCAACAACC
GTCGGCTGTCCGTAAAGAACTCCTTCTGCAGGAAGAACGGCTTGTACACC
AGGTACTATGCCTGCATGTGTGACAGAGGACAGAGACTTGAGGGCCACAC
AGCAGCGTCCAGCAGGGATGGCCGGGAAGGAGCATGGAACAAGCCATGCC
CACGTGGCCTTCCCCTTCCCTGGGAAATAGCATCCATGCTTCAGGGCTGG
CAATGGTCAGCGGAAGGTCACGTGGGACCCCAGCGAGATACTTAGGGGCT
TCTGTTAGTCCCACCAGACCCAGTCACAGCTTAGAGAATGTTAGAAACTC
CATGAGGAGGTGGACACTAAGAGTCTCTGCCAATAGCTGCAGAGTGCAGA
AACACATAGTGGTGGAAACCAACCTACGGTAGTTTGCAGTCAATAGCACT
AGTAACCAGCCTTACGGACGGACGGCCATGCACCCCATCTCGGACCCAGA

CATCCTGTTTCAGGCGGAANAAAAAGANGNNNNGCGCTTCCCTCACTCTA
GCANNGNGANNGNGGNGNAAGAGNNGTANACAANNCAGGAGGGGGGGGGG
NNGNGNAGAAAGAACTGCGACCACACAACCACGGAGACCAACAAGGCCAG
ATTTTTTCCCCCCCGTGAGAGGGTGTGTTACATTATATTAACCAACGACG
CAGCTGTATACATGGCCATTAATTTATATCGGCTGNGTCAGCAGAGGAAA
GGAGCGGGTAGCGTTCGATAATGATAGTGNTACGATATGTACGATATACA
ATTGCACCATTGGCGCCCGCCCATGCGCTTCTCCATCTTAAAGTATGCTT
GTTTTTCTCCCNCTTATGACACGCGACACGTAATATAGTAATTGATTGCA
CCAGATTATGCAGTTATTAATAGTTCACGACCGGCATAAGTCAATTGAAC
CTATATATTTTTTTTTATGTATTGCACGCATTAGCGATTGACGCGCTACA
TTCCTAACACCGAGCGCAATATCTCCGTTATGTTCTCCACCACTCCTTCC
CGCGCGTCTGCGCGATANAGTTATGAGGATGCGAGCGTAGCGTGCGTGAC
TAGATGATATAGCGTGGCGCGGCCACCCCCCNTATTTANGAATTATATAG
AATAAATGCGTCAACGCTATTAACATGGATCGGTGGAGTCCGTAGCGACG
CATTTAGCGGTGGTCGTTTGTGACACGTATAGCGACAGTGTATACTCTTT
ACACTAATATGAGCGCAGTCTGATGCGCGTGCTGCGTATGATTGTGATAA
TTACGTATGGACACATGATTACCGTTGCGATAGGTGTCGCACTAGTCGGG
GGGATATATATGGTGTTGTACATCAATAGCGATAGTGCACCCTAACCGTA
GTGATGGACTATTAGTCTCTCTATATTACAGTTGCCGCTGTCGTTATTGT
TGCACGCACACTGTTTGTCAATATATATCGGGATACGAGAGGAGGTGAGA
GCGTCGTGAATATTTTTAAGATGATCGCGCGAGCTGGTATGACACCATAA
TTACGGTATGGCGCAGGTGAGCCGTGGTGTGTACACACACGGTTGTCGTG
TATGTGATGAGTGAGTATTTCGACGACACCGNCGGGTGTAACCACATTGT
TATGTACGTGAGCTTACCAGTGNACACGTCGAGCGCACTGTCTCTTTGTC
TGATGCGTATGTATCGTCGACTGAGCCGAGGCATAGGCGTCTGCCGTGTT
CGTTGTTGTCTGCCGCGCGACGTCTGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_g17.b1 MSMg01no312_g17.b1 CHROMAT_FILE:
MSMg01no312_g17.b1 PHD_FILE: MSMg01no312_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:29 2005
         (709 letters)



>mm_chr11_113654015_113655123
          Length = 1109

 Score = 1280 bits (662), Expect = 0.0
 Identities = 695/706 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctccacataaccctgggctctaatctgggtcttgatactaacaagcaagaaaa 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 ggaattcctccacacaaccctgggctctaatctgggtcttgatactaacaagcaagaaaa 850

                                                                       
Query: 64  aggagcatcccagctaagtgggagaatggacctgggaaggaatggctggctgtgtggtct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 aggagcatcccagctaagtgggagaatggacctgggaaggaatggctggctgtgtggtct 790

                                                                       
Query: 124 gatgggtaccaattctctccccactctccccccacatctctttgccctcaggagggaata 183
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 789 gatgggtaccaattctctcccccctctccccccacatctctttgccctcaggagggaata 730

                                                                       
Query: 184 ccaagtcgggagcgctcggccacggggagatgctaagcttggatgaaagcagtttccctg 243
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ccaagtcaggagcgctcggccacggggagatgctaagcttggatgaaagcagtttccctg 670

                                                                       
Query: 244 ctctggagctcaacaaccgtcggctgtccgtaaagaactccttctgcaggaagaacggct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctctggagctcaacaaccgtcggctgtccgtaaagaactccttctgcaggaagaacggct 610

                                                                       
Query: 304 tgtacaccaggtactatgcctgcatgtgtgacagaggacagagacttgagggccacacag 363
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgtacaccaggtactacgcctgcatgtgtgacagaggacagagacttgagggccacacag 550

                                                                       
Query: 364 cagcgtccagcagggatggccgggaaggagcatggaacaagccatgcccacgtggccttc 423
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cagcgtccagcagggatggccaggaaggagcatggaacaagccatgcccacgtggccttc 490

                                                                       
Query: 424 cccttccctgggaaatagcatccatgcttcagggctggcaatggtcagcggaaggtcacg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cccttccctgggaaatagcatccatgcttcagggctggcaatggtcagcggaaggtcacg 430

                                                                       
Query: 484 tgggaccccagcgagatacttaggggcttctgttagtcccaccagacccagtcacagctt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgggaccccagcgagatacttaggggcttctgttagtcccaccagacccagtcacagctt 370

                                                                       
Query: 544 agagaatgttagaaactccatgaggaggtggacactaagagtctctgccaatagctgcag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agagaatgttagaaactccatgaggaggtggacactaagagtctctgccaatagctgcag 310

                                                                       
Query: 604 agtgcagaaacacatagtggtggaaaccaacctacggtagtttgcagtcaatagcactag 663
           ||||||||||||||||||  ||||||||||||||| |||||||||||||||| |||||||
Sbjct: 309 agtgcagaaacacatagtcatggaaaccaacctacagtagtttgcagtcaattgcactag 250

                                                         
Query: 664 taaccagccttacggacggacggccatgcaccccatctcggaccca 709
           ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 249 taaccagccttacggacagacggccatgcaccccatctcagaccca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space:   768201
Effective search space used:   768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)