BAC Information

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BAC

Clone NameMSMg01-312H23
Chromosome11 (Build37)
Map Location 8,840,613 - 8,840,924
singlet/doubletsinglet
Overlap genePkd1l1
Upstream geneLOC665380, Tns3, LOC638720, LOC624800
Downstream geneHus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13, LOC665435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312H23.T7 (MSMg01no312_h23.b1)MSMg01-312H23.TJ (MSMg01no312_h23.g1)
ACCAG434700AG434701
length749748
length of high quality
(start - end)
321 (39 - 359)292 (66 - 357)
definitionCHROMAT_FILE: MSMg01no312_h23.b1 PHD_FILE: MSMg01no312_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:35 2005CHROMAT_FILE: MSMg01no312_h23.g1 PHD_FILE: MSMg01no312_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
AAGAGAGAATTTGAGCCCCTCTGCACAGCAGAGCCTGGCCCAGACCTCAC
TCCTCGACCCCTTACTGCTGGATATTTTGAGCTTGATGATCCCTTAGTGG
GCTAACAGTAGACAATAGACAATGCAAATCCAAGATGCCTTGCACGGTAA
AGGCCTCCCTTTGTGTCCTTCCCAACTTGCCTCCTTGCTGATTGTTCCTT
TTGCAGGGTCCCTCTCTTTCCTTACTTTGTAGCCTCCCTCAGCCCTCTGA
TAACCCCCATAGGCTATTTCCACCCCTATCTATTCTAAACAGGTGACTTC
TGAACCAGTGTTTTTTTCTTGCGCCCGCCTTATATACACCTGACATCTTC
ACAGAAACTTCGCCGCCCCACTTTTAAAACGAAAGATCTTTAGAAGCATT
CTTGATCCCATGCATTGGTGCAAACAGCGGGTGATCAACTTGTCATGTAA
ATAGATGATCAATATTGATCTATGTTTCTGAAGAGTTGACAGACAAGGAG
AGAGAACGCTGGCTCTATCTGAAGGACTCTGGCCAGCTTGATAGTGGCCA
ACCTGGCTCCAGCAGGCCTTGCCCTTCTTTTCCATTCCCTCTGCCTTGCT
AAAAACTGTTAGATTACATTCTTAAAGCTAGTCACCAAGGTCCATTCTCT
TATTTGTGCACTTCCCCCTCCTGAGGCTGACTACTAAGGCCAGCTATCN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGTAGGAATTCAGTAAGAAGGTTATCTTTTCAGTA
ACATTCAAATTTACTTCTAGTAGAGACATGTGAAACTAATTAGGCATTAC
AAAAAATGGAGATGGAATAGCTCAGGGCTGGTCTGCAGAGTGTTTACTTG
GGACAATAGCCAGTTTTACCCAGACAAGGGAATTCACAATGTCCTAGAGA
ATAGGTGGGTTTACCATGAAAGAGTTAGGGAATCCCCCTGAGACAGGTTT
CTTCACTAGGCCCAAAGAAACAGTATAAATCAGGCATTTACTAAGAACCC
CTGGTGGTGTGCTTTATTAACCCCCCACCCCCATACCTGGCTCCCTTCTT
AGTGGTAGCGGCCCGCCCCCCATCAAAAAAAGAAGTATATATTCCTTTTG
TATTGTGTCACTGTAACTAGGAAGATGTATCTCGCCTGGTTTCTTGTTGC
TCTTCTGAATAAAAAGTATGATGCTCAACTTGAAAAATTACATTCAAATT
CTACACAATCTCTCGTGTTGATTCTGTTTGTCATTCATTCACCGACTCCT
TGTCCACCTGCAACCACAGACCCGTTCTACGCAGACAGGGACCAAAAGGG
TCCGTGGTAATACATACACACACACACACACACACACACACACACACACA
CACACATATATATATATATACACACACATGCATACTTACATATCATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_h23.b1 MSMg01no312_h23.b1 CHROMAT_FILE:
MSMg01no312_h23.b1 PHD_FILE: MSMg01no312_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:35 2005
         (321 letters)



>mm_chr11_8840410_8841124
          Length = 715

 Score =  532 bits (275), Expect = e-155
 Identities = 305/319 (95%), Gaps = 8/319 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcaagagagaatttgagcccctctgcacagcagagcctggcccagacctcact 63
           ||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct: 515 ggaattctcaagagagagtgtgagcccctctgcacagcagagcctggcacagacctcact 456

                                                                       
Query: 64  cctcgaccccttactgctggatattttgagcttgatgatcccttagtgggctaacagtag 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 455 cctcgaccccttactgctggatattttgagcttgatgatcccttagtgggctaacag--- 399

                                                                       
Query: 124 acaatagacaatgcaaatccaagatgccttgcacggtaa-aggcctccctttgtgtcctt 182
               ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 398 ----tagacaatgcaaatccaagatgccttgcacggtaacaggcctccctttgtgtcctt 343

                                                                       
Query: 183 cccaacttgcctccttgctgattgttccttttgcagggtccctctctttccttactttgt 242
           |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct: 342 cccaacttgcctccttgctgatcgttcctcttgcagggtccctctccttccttactttgt 283

                                                                       
Query: 243 agcctccctcagccctctgataacccccataggctatttccacccctatctattctaaac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agcctccctcagccctctgataacccccataggctatttccacccctatctattctaaac 223

                              
Query: 303 aggtgacttctgaaccagt 321
           |||||||||||||||||||
Sbjct: 222 aggtgacttctgaaccagt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 715
Length adjustment: 9
Effective length of query: 312
Effective length of database: 706
Effective search space:   220272
Effective search space used:   220272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)