BAC Information

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BAC

Clone NameMSMg01-312I04
Chromosome11 (Build37)
Map Location 49,907,951 - 50,066,325
singlet/doubletdoublet
Overlap geneRnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s
Upstream geneOlfr56, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c
Downstream geneMaml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312I04.T7 (MSMg01no312_i04.b1)MSMg01-312I04.TJ (MSMg01no312_i04.g1)
ACCAG434709AG434710
length722723
length of high quality
(start - end)
579 (51 - 629)288 (81 - 368)
definitionCHROMAT_FILE: MSMg01no312_i04.b1 PHD_FILE: MSMg01no312_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:36 2005CHROMAT_FILE: MSMg01no312_i04.g1 PHD_FILE: MSMg01no312_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,907,951 - 49,908,525)(50,066,045 - 50,066,325)
sequence
NNCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGGACAGACCGGGCTGCACAGAGAAACCCTGTCTTGGGA
AAAAGAAAAAAGAAAAGGAAAAGAAAAGAAAGGAAAGGAAGGTATTTAGG
GGTGGAGAGATAGCTCAGCCATTAAAGGTTGAGGCTTACAACAAAAATGT
TGACAGAAGTATAAATCTATGGTATACTTTTAATAATAATAAAAAAATTA
AGTTTTTCAACATTGCTAACTGTTCTCTAAAAGTCAGGTCATCCTCCTTG
TGAGACTAGTTTAACAGAAACTCTCACATGGCCAACACATGGAAGTATTA
ACTTGTCCTCTGTCCATTTTTCTAAGTTTTATTTATTTTTATTTATATGA
GTACACTGTAGCTGTCTGCAGACACACCAGAAGAGGGCACTGTATCCCAT
TACAGATCCACCATGAGCCACCATGTGGTTGCTGGAAATTAAACTTGGAA
ATTCTTGAAGGGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCC
CTCCTGTGTCCATTGTTATTGGAACCTTCTGGAATAAATGATAGCTGTTA
TGGCTCTTTGGATATGACACTACTATAAGCATCAGCTATTAGATTGCGTT
TTTCATTTTGTTTTAGATAGAACTTTGGGAGGCTCTAAAACAGAATTCTT
TTGTCCTACAATCCTACCGTCT
NCTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAAAAGCCTTCCTTGCCA
AAGACAGCCTAGAGAGGATGGCAGTAACAGTGAAAGGCCCAACCAAGGTC
AGCAGGCGACTCAACCTCAGCATCCACAACTTCATCTGCCCACAGATCCC
AGGGAACCCCAAACCACAAAGGGCAAAGACAGAAGCCGCTGACCCACCAG
CTGAGAGTCCGACCCCCACCTCCGGCCCCTGAGGCTGAGCAAGACGAGGC
TGAGCAGAAGCTGGCCTAACACACACCTCAGCCATCATCTGATTTAGTGA
TCTAAGAAGAGATTCTTTTTAGAGAAGCGCACCCCTCAAAGCTGTCCTTT
AAGTGTCACACACACTGAGGATAGCTGATGAGAAAGCTGATCTGACTCCA
TGACAGGCTTCACACTGGCAGTTCAGGAGACAAGGCCTAACTCTGTTCCC
AAGAACTGAGCAAGTCCAGGCAAGTCCCAGGCCTCAGAAGCTGCCCTGGC
CTGAGGCAAGGACAACGGGTCAGCAGCAGTTTCCAGACTTCCCCAGAAAC
AGTTTTCCAGCCCCCATGGCCTGGTAATGGCTCTGGAATGTCCCTAGAGA
TGGAGCAAGATAAAGGTTGCTGGAATTCCCCTGATGAGCTTTAAATCAGG
CCTGCGAGCTCACTTGCGTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_i04.b1 MSMg01no312_i04.b1 CHROMAT_FILE:
MSMg01no312_i04.b1 PHD_FILE: MSMg01no312_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:36 2005
         (579 letters)



>mm_chr11_49907747_49908725
          Length = 979

 Score = 1096 bits (567), Expect = 0.0
 Identities = 573/575 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacagaccgggctgcacagagaaaccctgtcttgggaaaaagaaaaaagaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacagacagggctgcacagagaaaccctgtcttgggaaaaagaaaaaagaa 264

                                                                       
Query: 65  aaggaaaagaaaagaaaggaaaggaaggtatttaggggtggagagatagctcagccatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggaaaagaaaagaaaggaaaggaaggtatttaggggtggagagatagctcagccatta 324

                                                                       
Query: 125 aaggttgaggcttacaacaaaaatgttgacagaagtataaatctatggtatacttttaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaggttgaggcttacaacaaaaatgttgacagaagtataaatctatggtatacttttaat 384

                                                                       
Query: 185 aataataaaaaaattaagtttttcaacattgctaactgttctctaaaagtcaggtcatcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aataataaaaaaattaagtttttcaacattgctaactgttctctaaaagtcaggtcatcc 444

                                                                       
Query: 245 tccttgtgagactagtttaacagaaactctcacatggccaacacatggaagtattaactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccttgtgagactagtttaacagaaactctcacatggccaacacatggaagtattaactt 504

                                                                       
Query: 305 gtcctctgtccatttttctaagttttatttatttttatttatatgagtacactgtagctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcctctgtccatttttctaagttttatttatttttatttatatgagtacactgtagctg 564

                                                                       
Query: 365 tctgcagacacaccagaagagggcactgtatcccattacagatccaccatgagccaccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctgcagacacaccagaagagggcactgtatcccattacagatccaccatgagccaccat 624

                                                                       
Query: 425 gtggttgctggaaattaaacttggaaattcttgaagggcagccagtgctcttaaccactg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtggttgctggaaattaaacttggaaattcttgaagggcagccagtgctcttaaccactg 684

                                                                       
Query: 485 agccatctctccagccctcctgtgtccattgttattggaaccttctggaataaatgatag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agccatctctccagccctcctgtgtccattgttattggaaccttctggaataaatgatag 744

                                              
Query: 545 ctgttatggctctttggatatgacactactataag 579
           ||||||||| |||||||||||||||||||||||||
Sbjct: 745 ctgttatggttctttggatatgacactactataag 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no312_i04.g1 MSMg01no312_i04.g1 CHROMAT_FILE:
MSMg01no312_i04.g1 PHD_FILE: MSMg01no312_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:36 2005
         (288 letters)



>mm_chr11_50065841_50066528
          Length = 688

 Score =  520 bits (269), Expect = e-152
 Identities = 278/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   aaagccttccttgccaaagacagcctagagaggatggcagtaacagtgaaaggcccaacc 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 485 aaagccttccttgccaaagacagcctagagaggatggcagtaaaagtgaaaggcccaacc 426

                                                                       
Query: 65  aaggtcagcaggcgactcaacctcagcatccacaacttcatctgcccacagatcccaggg 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 425 aaggtcagcaggcgactcaacctcagcatccacaacttcgtctgcccacagatcccaggg 366

                                                                       
Query: 125 aaccccaaaccacaaagggcaaagacagaagccgctgacccaccagctgagagtccgacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaccccaaaccacaaagggcaaagacagaagccgctgacccaccagctgagagtccgacc 306

                                                                       
Query: 185 cccacctccggcccctgaggctgagcaagacgaggctgagcagaagctggcctaacacac 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cccacctccgacccctgaggctgagcaagacgaggctgagcagaagctggcctaacacac 246

                                                    
Query: 245 acctcagccatcatctgatttagtgatctaagaagagattc 285
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acctcagccatcatctgatttagtgatctaagaagagattc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)