BAC Information

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BAC

Clone NameMSMg01-312L10
Chromosome11 (Build37)
Map Location 26,695,832 - 26,696,104
singlet/doubletsinglet
Overlap genenone
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300
Downstream geneLOC666270, LOC100042367, LOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312L10.T7 (MSMg01no312_l10.b1)MSMg01-312L10.TJ (MSMg01no312_l10.g1)
ACCAG434853AG434854
length760740
length of high quality
(start - end)
277 (38 - 314)290 (68 - 357)
definitionCHROMAT_FILE: MSMg01no312_l10.b1 PHD_FILE: MSMg01no312_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:51 2005CHROMAT_FILE: MSMg01no312_l10.g1 PHD_FILE: MSMg01no312_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
CAAACCTGAAGTGTTTTAATTTTTGTATTTTGGAGTAGATGAGGAGATGA
CTGGACATGGTTCTGATCTGATCAAGGAGGGAGTGTTCTCTTTAATTTTC
CTCTTTCTCCATTTGCCCTGGTAAAGTCCTTACTCCGTTTTTCCTAGACT
CTCCTTCTGAAACTAGCAGCACTCTCTTTTGGTGGTAGAGTTGAGAGGTG
ATTTGCTCACTTTAAGGTGAAACATACTCAAGTGTGCTTTATTTTAACTG
CTCAATGTTTCCTCTAATATTAGAGGCTATAGTTTGGGTATTGGAACAGA
TTTTATGNTTTAGCCCCCGCTGCCCCTAGAATTATTGAAATCTATCACAT
GTTTCTGACCCCCTTCTATAAAAAAAAATCCGGATGAGGGGGAATATGCA
TGAGTTCTATAGTATTTCCCGGTGTCCCTTGGTCTATTGCCTTCAATACA
GATAATACTATGTCTTGCCCCTAACGCTGCAAGTATATGTACAGTTCCAC
ACATTCACTGTATTACCCTATTTTTGATCATTTATATGATATCACCTTTT
ACCAGGTTTGACTGTCTATTTTTCTGAGATTGAGTATCCTTTTTGCTTCC
TTTTTATTTTACCTGCCTTTTTTACCCCGTTTTTTCGTCCTTTTTTCTTC
CACTCTTTTTTCATATTACCGGTCATTTCCCCCATTTTTTTCTTTTTTAT
TCACCTCCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAAAAGCAC
CTGAAAAACTGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAT
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTC
CATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTG
GCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATAC
CTCTTTTTGTTTATACCCCCACCACGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTACGCCCATAGAAAACATAATATATAATAGCCAGAAGCTGGAA
AGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA
TCTACACAATGGAGCACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
ACTTTCACAAAGAAACTCACTCAATATGTACTCACTGATAACTGGATATT
ATCCCCTTACCTTAGATACCCAAGATACATGACATACTTTGCTAAACACA
TGGATATTCTATAAGAATGTTCACTGACCTGTGGACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_l10.b1 MSMg01no312_l10.b1 CHROMAT_FILE:
MSMg01no312_l10.b1 PHD_FILE: MSMg01no312_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:51 2005
         (277 letters)



>mm_chr11_26695628_26696304
          Length = 677

 Score =  491 bits (254), Expect = e-143
 Identities = 269/274 (98%), Gaps = 2/274 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcaaacctgaagtgttttaatttttgtattttggag-tagatgaggagatga 63
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 205 gaattctttcaaacctgaagtgttttaatttttgtattttg-aggtagatgaggagatga 263

                                                                       
Query: 64  ctggacatggttctgatctgatcaaggagggagtgttctctttaattttcctctttctcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctggacatggttctgatctgatcaaggagggagtgttctctttaattttcctctttctcc 323

                                                                       
Query: 124 atttgccctggtaaagtccttactccgtttttcctagactctccttctgaaactagcagc 183
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 ctttgccctggtaaagtccttactccatttttcctagactctccttctgaaactagcagc 383

                                                                       
Query: 184 actctcttttggtggtagagttgagaggtgatttgctcactttaaggtgaaacatactca 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 actctcttttggtggtagagttgagaggtgatttgctcactttaaagtgaaacatactca 443

                                             
Query: 244 agtgtgctttattttaactgctcaatgtttcctc 277
           ||||||||||||||||||||||||||||||||||
Sbjct: 444 agtgtgctttattttaactgctcaatgtttcctc 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)