BAC Information

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BAC

Clone NameMSMg01-313A21
Chromosome11 (Build37)
Map Location 53,253,468 - 53,254,083
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9
Downstream geneShroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313A21.T7 (MSMg01no313_a21.b1)MSMg01-313A21.TJ (MSMg01no313_a21.g1)
ACCAG435097AG435098
length1,2121,201
length of high quality
(start - end)		839 (43 - 881)323 (70 - 392)
definitionCHROMAT_FILE: MSMg01no313_a21.b1 PHD_FILE: MSMg01no313_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:19 2005CHROMAT_FILE: MSMg01no313_a21.g1 PHD_FILE: MSMg01no313_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGTTANNNNNNCCGCATTGGNCGCTAACACTCACTAAGGGAGAGGATC
CGCGGAATTCACTCACGGGCTGGAGAGATGACTCAGCGGTTAGGAGCACT
GACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGG
CTCACAACCATCTGTAATGGGATCTGACGCCCTCTTCATTTGTGTCTGAA
GAAAGACTTCAGCTCATAAGACACAAATGATCCAATTAGAAAGCAGGTAA
AGGACCTGAGCAGACATTTCTTTTTAAGAGTTTATTTTTAACCAGAGGTG
TCTGTTGGATTCCTTGGATTTACAGGCTGTGGACCACCCAACATGGTTGC
TGGGAGTTGAGCCCAGGTCCTCTAAAAGAGCAGCAAGAGCTCTCAGCTGC
TGAGTAGCCTCAGTCCCAGAGAAGATATACAAAGGGCTGATGATGGCACA
CAGAGACACCCCAACATCGTCTTTAGGAGGGTGCTAACCCAAACCGCACT
GAGGCACTGTTTCACATGCTCCAGGATGGCTGGGATTTAAACAAAACAAA
ACAAAAAACCCTCAAAGTAAGAGGATGCAGGGACAGAGGACCTTCCTGCA
CTGTGGAGGCTGCTTGGGGGAAAGAGTGCAGTACATCCCCAGATGGCTGA
AGAGACGCTGTACAGCGGCGTAGCTGCTTAATCCTAGCACTGGGAATCCG
AAGCAGGAAGATTATGAGTTTGAGGCCAGAGTGGTTTACTTGAGGTTTGG
TGGCACCCACCTTTAATCCCAGTGCTGAGGAGGCAGGGGTATCTCCGAGT
TTGAGGCCGGCCTGAGCTAAATGATGAGACTCAAGAACAAAAGGCAAGAG
ATGGAAGACATAAGCCAGCACTTCTCCTAGAGAAAGATCCAAGAGAAGTG
AAGCAGACTACATTTGATTATTCACTGTGNCAAAAGTGGGGCTGGAACAA
TGGCCAGGGGTTAAGGAACTGGCTGCTCCTCCGAAGGGCTTTTGNCTGGG
CACTTGCTTGGGGGATCATATCTCCTGGGAATCCAGTTGAAGGGAACCCT
GGCCCCCTGGGGAAACCGCACTCCCAATGGGGATAAAATTGCTTCTAAAC
AAAACTTGTTCCCCAATATAAAATTATTTTAAAAAAAAACTTGGGCGTTG
GGAAAAACCAAAATCAAAACCATTGTGTTTGTAAGAAATCACTTTCCCCC
GAGTATTAAAAA

NNNTTCTTATAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGCTAAATGCAAAGTCATTAAGATTTGAC
ACTATTTTCTTTAGCCTTTACACTAACTTTATTCTTTTGGCTGTGTCTCT
TTGGTTATCTTGACACAATTTGTTGAAAAGGTTATTTCTTCATTGAATGA
TCCTGGCATCCTTTTTGAAAATTAGTTGACTTCTTTTTAACAGCAAATAT
ATATTTAGTTTTCTTATTATTTTGGTTGCTCTTTCCCAGAAAATTCTGTC
ATTAAAAAGAAGAATTTGTTTGCTTTTTGTTTTGTTTTGTTTTGTTTTGT
TTTTTGAAACAGAGTTTCTCTGTGTANNCCTGNCTGTCCTGTTTTTTTCT
CTGTANATCAGGCTGGCCTTGAACTCAGAAANCNGNCTGGTTTTTTTTTT
TTCCCCCCCCCCCNAAAGGNNNGNCCCCCCACAAAAAAAAGGGGGGNNNN
NNNNNNNNNNNNNCNNNNNNNNNNNNCNCCCCCCNNCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCNCCCCCCNCCCCCCCCCCCCCCCNCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCNCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCC
CCCCCCCCCCCCCCCCNCCCCCCCCCCCNNCCCCCCNNCCCCNCCCCCCC
CCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCNCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCNCNNCCCCCCCCCCNCNCCNNC
CNCCCCCCNNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCC
CCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_a21.b1 MSMg01no313_a21.b1 CHROMAT_FILE:
MSMg01no313_a21.b1 PHD_FILE: MSMg01no313_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:19 2005
         (839 letters)



>mm_chr11_53252845_53254083
          Length = 1239

 Score = 1052 bits (544), Expect = 0.0
 Identities = 598/632 (94%), Gaps = 29/632 (4%)
 Strand = Plus / Minus

                                                                        
Query: 221  gacatttctttttaagagtttatttttaaccagaggtgtctgttggattccttggattta 280
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1239 gacatttctttttaagagtttatttttaaccagaggtgtctgttggattcattggattta 1180

                                                                        
Query: 281  caggctgtggaccacccaacatggttgctgggagttgagcccaggtcctctaaaagagca 340
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1179 caggctgtggaccacccaacatggttgctgggaattgagcccaggtcctctaaaagagca 1120

                                                                        
Query: 341  gcaagagctctcagctgctgagtagcctcagtcccagagaagatatacaaagggctgatg 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 gcaagagctctcagctgctgagtagcctcagtcccagagaagatatacaaagggctgatg 1060

                                                                        
Query: 401  atggcacacagagacaccccaacatcgtctttaggagggtgctaacccaaaccgcactga 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 atggcacacagagacaccccaacatcgtctttaggagggtgctaacccaaaccgcactga 1000

                                                                        
Query: 461  ggcactgtttcacatgctccaggatggctgggattt-----aaacaaaacaaaacaaaaa 515
            |||||||||||||||||||||||||||||| |||||     |||              ||
Sbjct: 999  ggcactgtttcacatgctccaggatggctgagattttttttaaa--------------aa 954

                                                                        
Query: 516  accctcaaagtaagaggatgcagggacagaggaccttcctgcactgtggaggctgcttgg 575
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953  acccttaaagtaagaggatgcagggacagaggaccttcctgcactgtggaggctgcttgg 894

                                                                        
Query: 576  gggaaagagtgcagtacatccccagatggctgaagagacgctgtacagcggcgtagctgc 635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893  gggaaagagtgcagtacatccccagatggctgaagagacgctgtacagcggcgtagctgc 834

                                                                        
Query: 636  ttaatcctagcactgggaatccgaagcaggaagattatgagtttgaggccagagtggttt 695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833  ttaatcctagcactgggaatccgaagcaggaagattatgagtttgaggccagagtggttt 774

                                                                        
Query: 696  acttgaggtttggtgg--cacccacctttaatcccagtgctgaggaggcag------ggg 747
            ||||||||||||||||  |||  |||||||||||||| |||||||||||||      |||
Sbjct: 773  acttgaggtttggtggtgcac--acctttaatcccagcgctgaggaggcagaggcagggg 716

                                                                        
Query: 748  tatctccgagtttgaggccggcctgagctaaatgatgagactcaagaacaaaaggcaaga 807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  tatctccgagtttgaggccggcctgagctaaatgatgagactcaagaacaaaaggcaaga 656

                                            
Query: 808  gatggaagacataagccagcacttctcctaga 839
            ||||||||||||||||||||||||||||||||
Sbjct: 655  gatggaagacataagccagcacttctcctaga 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 839
Length of database: 1239
Length adjustment: 10
Effective length of query: 829
Effective length of database: 1229
Effective search space:  1018841
Effective search space used:  1018841
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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