BAC Information

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BAC

Clone NameMSMg01-313B24
Chromosome11 (Build37)
Map Location 111,612,401 - 111,613,082
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
Downstream geneLOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313B24.T7 (MSMg01no313_b24.b1)MSMg01-313B24.TJ (MSMg01no313_b24.g1)
ACCAG435143AG435144
length1,1781,204
length of high quality
(start - end)
821 (54 - 874)312 (474 - 785)
definitionCHROMAT_FILE: MSMg01no313_b24.b1 PHD_FILE: MSMg01no313_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:28 2005CHROMAT_FILE: MSMg01no313_b24.g1 PHD_FILE: MSMg01no313_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATTTNNNNNNNGGATCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGGTCTTGTAGCTTCTGAATGAGTCAGTTCCCGAATT
GCTCACCTTTTTAGGAGTCTCCTTCTCCTTCTTCCCCATCACGTTTGATT
TGTATCAAATGAAGATGATGCTAAGAATCATGACCTGGGCAGGTGGCCTA
GCTTTCATGGTTATCACTATAAGTCAGGAGATCAATATACTATGTTGTTC
TCTGTTTTTGACGCTCAGCTCTGTTTTGATTCTGATCTGTATGCATCCAT
CTATCAGGCTCTTCCACTGTGCTAACAATTCAGCTATCAATTTTTAAAAG
GCAGATTCTGTTTAAGTAGATATGAAACATGCCCAAAACCTTTCACATTT
TTATTAAGTTCCTGGATACTGCTGTGTTATCCCTCAGTACTTGAAATTCT
GCAGACTGTTTTCTCCTCCATCTCTAATCCTCTCCAAGAAGATAGAGAAG
ATAATGAATTAACTTGATCTATCTCCTTAAGCTTGACTGTCATCAGCAAA
TTGCCCTGCAGAACATTATAAATGGATACTACAAATTAGAAACTGTGTCT
TTAAATCACTTCCTTCCTCTGTCTCTTCTCTTATTTCAAAAACTTGCAAA
TCCACAGTCAATCTGTTGAGCTCTGTCAGACAAAAATGTTAGCAGGGTGC
TTCTTATCAAGGACTTTGTGGAAGAACATTTTTGTACTCAGGACTGTTAT
TTTGTTTGCTAGGATTATCTGAAAACTTCAACATACACATAGCAAGACTG
AACTGACTCAACAGGTTAAATTGATATATTTTTGTGTATATATGTATATG
TATACCTATATGTATATATATGCATATGCATATATGGNNACCCCCCCATT
CTCCCCCTTTCCCCTCTCCCTCTTTCTTTCCCTCCCCTCCTCCTTTTCCT
CTCCTTCTCACCCCTCTTTTATTCCCTCACCTCCTCTCCTTTTCCTATCT
CTTCCCTCTCTTTCTCTCCCCCTTCTTTCCCTCCTTTCCTCTTCCCTTCT
TTTTTTTTTACCCTCTCCTCTTTTTCCTCCTCTNCTCTTTTTCTCTCCCC
TCTCTCCTCCCCCCCCCTTTTTTCCTTTCTTCTCATCTTCTCCCAACTCT
CTTCTCCCTTCTCCCCCTTCTCTTCTTT
NNTTCTATAACGGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAGGTTCTGTGTTTCAAGG
GAAAGGGAGAAGGGCAGCTAACCCCATGACCAGAGTTACACACACACACA
CACACACACACACACACACACACACACACACTCACAAACACAAACACACA
CACATGCACGCGCGCACGTGGAAGTAAAAATACATATGTAGCCAGGCAGT
GGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGTAGGCAGAT
TTCTGAGTTTGAGGCCAGTCTGGTCTACAGAGTGAGTTCCAAGACAGCCA
GGGCTATACTGAGAAACCATGTCTCAAAAACAACAAAAGACATACATGTA
CCTTCACATGAACATGCACATGATGGAAAAGGGAATTAACAATTTTATTT
ATTTTTATCTCACCCCCCCAGGNCCTGTCTAGTTGTTAAAAAAAAAAAGA
TGCTTAAGGAGAGTTAAAATCATCTGAGTATCTGCCTCATTTTGTATGCA
CTTAAATGTGTAACCACATAGAAGAGGGGACAGAAAGATCATAAGAACCA
GACCACTACATTTGCTGCAAGAAAACACCTTTTACATATACAACAGGAAG
TTCACCACTGAATCTCAACAATGTAGTCACCTAAACAAGATCTGCACAAT
GATACCACCATTTGATGTCCCATCCTGGGGATGGGGAAATCTCGAAAGGT
GCCACCTCTAGACCAAGTGCAATAGACAATTGGTAACTGCCAAGAGAAAG
AGAACCAGTATTTTCCACAGACAAGCCTGATAACTGACAGGTTATACAAT
TTCAATTGGTCATCCATAAACACATATACCTACAAGAAATATTAATATAC
TTATTAAACTGTATTTATATCACTGACTTTGTGGCTCTGTAAATTTAACC
CCTCGAAATTTTTTAAAAGGCAATTAAAAACCAATACCCCTTCCCCAACC
GAACTCTTTACCAAGTCTTCCCCATCCTATATAACTTCTTTCCCCTCTAA
CCTTCTCATTCTCACACCACAACCTTTTACCTTCCTTTTCCCTCATCTCC
CACATTTTCTCCTCTCCTTCTACTCCCTACTACCTACCACTCATCACCCT
CATATCTATTCTCCTCTACATCCTAACCCTATACTCCCACCTTCCTTCTT
CCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_b24.b1 MSMg01no313_b24.b1 CHROMAT_FILE:
MSMg01no313_b24.b1 PHD_FILE: MSMg01no313_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:28 2005
         (821 letters)



>mm_chr11_111611862_111613082
          Length = 1221

 Score = 1249 bits (646), Expect = 0.0
 Identities = 673/682 (98%)
 Strand = Plus / Minus

                                                                        
Query: 136  gcaggtggcctagctttcatggttatcactataagtcaggagatcaatatactatgttgt 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 gcaggtggcctagctttcatggttatcactataagtcaggagatcaatatactatgttgt 1162

                                                                        
Query: 196  tctctgtttttgacgctcagctctgttttgattctgatctgtatgcatccatctatcagg 255
            |||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 1161 tctctgtttttgacactcagctctgttttgattctgatctgtataaatccatctatcagg 1102

                                                                        
Query: 256  ctcttccactgtgctaacaattcagctatcaatttttaaaaggcagattctgtttaagta 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 ctcttccactgtgctaacaattcagctatcaatttttaaaaggcagattctgtttaagta 1042

                                                                        
Query: 316  gatatgaaacatgcccaaaacctttcacatttttattaagttcctggatactgctgtgtt 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gatatgaaacatgcccaaaacctttcacatttttattaagttcctggatactgctgtgtt 982

                                                                        
Query: 376  atccctcagtacttgaaattctgcagactgttttctcctccatctctaatcctctccaag 435
            ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 981  atccctcagtacttgaaattctgcagactggcttctcctccatctctaatcctctccaag 922

                                                                        
Query: 436  aagatagagaagataatgaattaacttgatctatctccttaagcttgactgtcatcagca 495
            ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921  aagatagagcagttaatgaattaacttgatctatctccttaagcttgactgtcatcagca 862

                                                                        
Query: 496  aattgccctgcagaacattataaatggatactacaaattagaaactgtgtctttaaatca 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  aattgccctgcagaacattataaatggatactacaaattagaaactgtgtctttaaatca 802

                                                                        
Query: 556  cttccttcctctgtctcttctcttatttcaaaaacttgcaaatccacagtcaatctgttg 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801  cttccttcctctgtctcttctcttatttcaaaaacttgcaaatccacagtcaatctgttg 742

                                                                        
Query: 616  agctctgtcagacaaaaatgttagcagggtgcttcttatcaaggactttgtggaagaaca 675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741  agctctgtcagacaaaaatgttagcagggtgcttcttatcaaggactttgtggaagaaca 682

                                                                        
Query: 676  tttttgtactcaggactgttattttgtttgctaggattatctgaaaacttcaacatacac 735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  tttttgtactcaggactgttattttgtttgctaggattatctgaaaacttcaacatacac 622

                                                                        
Query: 736  atagcaagactgaactgactcaacaggttaaattgatatatttttgtgtatatatgtata 795
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621  atagtaagactgaactgactcaacaggttaaattgatatatttttgtgtatatatgtata 562

                                  
Query: 796  tgtatacctatatgtatatata 817
            ||||||| ||||||||||||||
Sbjct: 561  tgtatacatatatgtatatata 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 821
Length of database: 1221
Length adjustment: 10
Effective length of query: 811
Effective length of database: 1211
Effective search space:   982121
Effective search space used:   982121
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)