NCGATTCTTNNNNNNNCCACTGGGCGCTAAGACTCCTAAGGGAGAGGATC
CGCGGAATTCACAGCAGNAGNCATATCCCTTAAAGTAGTTTCTATCTCAG
GAAGCATGAAGAAAAATCATTCAAAAGAATCAACCCTAAGACAATACAAA
ATATATTCTATAAAGAATGGGCTTGACAAACAACCAAGTAAATATCTCCA
ATGTCTTCTGAGAATAGATTAAGAAAGAGAAATCTACACTGACCATCTTC
AGACAGTCCCAAGATTCCCTCTGCCAACACCCACCTGCAGATTTCTTATT
ACCAAAGAGTAAGAGAGTTCAAAGGACCATTTCTTTCAGAAAGATCTTCC
ACCTCGTCATTCCATCAAGATCTCCATTGTGGTTGCCAAGGAAACACAGA
AAGTGGGACTCATACTCTAAAACTGTAAGTCGTTTTCCATAACCCACCAA
ATAGCTGGCAGATGTTGATGAATTTGACTCAGTACCACCCAGGAGCAGAA
CTCTGGACAAATGTGGGAAGCTTCCAAGTGTATGACACAGCTGGCCACAC
CCTCTGCCCCTCATACAGGAGGTCAATGCTCTGAGGGAGAAGGAAGACTT
GCTTCAATGCTGTTCTCAGCCATTGAATTGGATGCAAGCCCCACATTTTC
TCCAGAGCCATTTCTTTAAGACTATCTGACCCAGAGGAGGTCATATTCCA
TCATGGCAAAGAGATGTTTCTGTCATCACCCTCTACAGACAGCTGTCCAC
AGAAGCAGAGAGGTCTGGTTGGTACTCTGTTCATTTGCTTCTAGAAGAAC
TTTTCAAACCTTTCCCCGCCTCCTCTGAATTGATNATGCCACCACAAGGG
AACAAGTGGCAGCTTTAAGAGTTTGGAACACGCAACCTTGCTTAAGGGAA
CCAATGCACCTTTCTCTGTGAAGACAATGGCCATATAATAGAACCATAGT
GTTATTCTTATGGAAAGCTGCGAAAGAAAAAAGTTTGATATTTCTGCATC
CAAAATATTCTCGAATAAACCCAGCGCCTATCTTGTGGGCCCACCTCTGG
GCCTTCCGGGCTAACGTCCAAAATTAATTTGCCCCCAATTTTTACCGGAA
CCTTTTCACACCTTTTTCCTGGATTCCCAGATTCTGTTTTTACAAAGGGG
CTATCTCTTCTCTGACTCAGTTTTTCCATATTAATAAAAATCCTCTTTTC
CTGTTCTCCAAGAATGAACCCCCTTCTCTCTCCCTCCTATATCCAATTTC
TATTTATTTCATAACCTTTTTAATATTTCTATAAACACCATCTTTCTC

NCCTTCANNNNNNAAAGAAGGNAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTCTTAAGCAATGTAGA
GCGAACTTTAATAAACCTTGTTTATTTATCCAGCTCCATTCCCTGGGATG
GACTGTTCACCTCTCCTCAGGTCCCAGTGAATTGTTTGTTTTGGACAACC
TTTTGACTTATGATCTGAGCATTCTTAGAACTCTGCATAGGAGATGAAAA
GGTTTGCTGGCCTAGTGGGGTCTTTGAAGGGAGTATCTATCTGCCCTGGG
GCCTCCTGGTACCTTCAAGCAAGAGCTTAGGTTGCCATGGTACATAGGCA
CATTGACATTCCTCCCCTTAACACAGAGCAGGACTTTCGAGGGCATTCTG
CAACTAAATATCAACAGATGAGGCATGGATGGGATGGGAAGAAGAGGGAA
CTGAAAGGGTTTTTTTTCCCCCCCATGCTCACCACAGATTGGCTAACTAA
AAAAAAAAGAAGGACACATTCAACTGGTTTCAAAACCAGTGTTAGATTTT
TTTTCCTTTCCCTGTGAATCCACTTGTAATTCTTGCATAACATTCACATT
CTTTATGAGATTTTTGGCCCCATAAGTATAAGACTGTGTTTCATTTAAAA
TAACAGTACTGAAAGTCTGAGCCACATAATGAGCCTTTAAACCAACCAAT
CATGGCAAAAGCCTAGCTGTCACTCAAGCCCAGTCTAGGGATACTTTCCC
TATGGGTCTAGTGGATGCAGGATACCTGTAGGTACTTCCTGAGTAAATGT
CTGATTGAAGAAAAAAATTACAGAAGAACCCCCTAGCCCAGGGGGTTTTG
GTTCCCTGCTCAGAATTCATTAGCAGGACCGTTTTGCCAGATACACAATG
GGGGCTTTGGAAACTCCTGGTACTCCGTTCAGTTTGTCTCACAAATGTGG
CCATAATGGTCAGCCAACCTTCATATAAGAAATATCTTTCAGGAAAGGTG
ACTTTTTGACCTGGCTCCAAGCAAGAAAAGGCCCCTATTCTCTATAATTT
TCAACTCCCCTCTTAAAAATATCTTCTACCTCGTGTCCTTCATAGTTTCT
AAGTTATTTTCGTTCCAAAATACCCCTTCCCTGTTTAAAATAACTATTAG
CCTCTCTATAAAATTTCTTCTTTTTCCCTGCATATATAAATTGATCTAAC
ACCTACCTTTACTTTCCTATTATAAACATCTTCATTCAAATCTTTCACTC
CTCTCCATCTTTCCTTTATTTTCATTACCTACTAGGAATCATATTATTCA
TCTTATTCATCTCTAGTCTGCCACTCTC

Query= MSMg01no313_e12.b1 MSMg01no313_e12.b1 CHROMAT_FILE:
MSMg01no313_e12.b1 PHD_FILE: MSMg01no313_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:47 2005
         (731 letters)



>mm_chr11_44965059_44966189
          Length = 1131

 Score = 1350 bits (698), Expect = 0.0
 Identities = 722/730 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatctcaggaagcatgaagaaaaatcattcaaaagaatcaaccctaagacaatacaaa 60
           ||||||||||||||||||||||||||| |  || |||||||||  |||||||||||||||
Sbjct: 201 tctatctcaggaagcatgaagaaaaattaggcagaagaatcaattctaagacaatacaaa 260

                                                                       
Query: 61  atatattctataaagaatgggcttgacaaacaaccaagtaaatatctccaatgtcttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 atatattctataaagaatgggcttgacaaacaaccaagtaaatatctccaacgtcttctg 320

                                                                       
Query: 121 agaatagattaagaaagagaaatctacactgaccatcttcagacagtcccaagattccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatagattaagaaagagaaatctacactgaccatcttcagacagtcccaagattccct 380

                                                                       
Query: 181 ctgccaacacccacctgcagatttcttattaccaaagagtaagagagttcaaaggaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgccaacacccacctgcagatttcttattaccaaagagtaagagagttcaaaggaccat 440

                                                                       
Query: 241 ttctttcagaaagatcttccacctcgtcattccatcaagatctccattgtggttgccaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctttcagaaagatcttccacctcgtcattccatcaagatctccattgtggttgccaag 500

                                                                       
Query: 301 gaaacacagaaagtgggactcatactctaaaactgtaagtcgttttccataacccaccaa 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaacacagaaagtgggactcaaactctaaaactgtaagtcgttttccataacccaccaa 560

                                                                       
Query: 361 atagctggcagatgttgatgaatttgactcagtaccacccaggagcagaactctggacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atagctggcagatgttgatgaatttgactcagtaccacccaggagcagaactctggacaa 620

                                                                       
Query: 421 atgtgggaagcttccaagtgtatgacacagctggccacaccctctgcccctcatacagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtgggaagcttccaagtgtatgacacagctggccacaccctctgcccctcatacagga 680

                                                                       
Query: 481 ggtcaatgctctgagggagaaggaagacttgcttcaatgctgttctcagccattgaattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtcaatgctctgagggagaaggaagacttgcttcaatgctgttctcagccattgaattg 740

                                                                       
Query: 541 gatgcaagccccacattttctccagagccatttctttaagactatctgacccagaggagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgcaagccccacattttctccagagccatttctttaagactatctgacccagaggagg 800

                                                                       
Query: 601 tcatattccatcatggcaaagagatgtttctgtcatcaccctctacagacagctgtccac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcatattccatcatggcaaagagatgtttctgtcatcaccctctacagacagctgtccac 860

                                                                       
Query: 661 agaagcagagaggtctggttggtactctgttcatttgcttctagaagaacttttcaaacc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 agaagcagagaggtctggttggtactctgttcatttgcttctagaagaacttttcaaacc 920

                     
Query: 721 tttccccgcc 730
           ||||||||||
Sbjct: 921 tttccccgcc 930


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 731
Length of database: 1131
Length adjustment: 10
Effective length of query: 721
Effective length of database: 1121
Effective search space:   808241
Effective search space used:   808241
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no313_e12.g1 MSMg01no313_e12.g1 CHROMAT_FILE:
MSMg01no313_e12.g1 PHD_FILE: MSMg01no313_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:47 2005
         (380 letters)



>mm_chr11_45124941_45125720
          Length = 780

 Score =  671 bits (347), Expect = 0.0
 Identities = 371/379 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtcttaagcaatgtagagcgaactttaataaaccttgtttatttatccagctccattc 60
           |||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||
Sbjct: 579 tagtcttaagcaatgtagagcgaactttaataaaccttggctatttatccagcttcattc 520

                                                                       
Query: 61  cctgggatggactgttcacctctcctcaggtcccagtgaattgtttgttttggacaacct 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 519 cctgggatggactgtccacctctcctcaggtcccagtgaattgtttgttgtggacaacct 460

                                                                       
Query: 121 tttgacttatgatctgagcattcttagaactctgcataggagatgaaaaggtttgctggc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tttgatttatgatctgagcattcttagaactctgcataggagatgaaaaggtttgctggc 400

                                                                       
Query: 181 ctagtggggtctttgaagggagtatctatctgccctggggcctcctggtaccttcaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctagtggggtctttgaagggagtatctatctgccctggggcctcctggtaccttcaagca 340

                                                                       
Query: 241 agagcttaggttgccatggtacataggcacattgacattcctccccttaacacagagcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agagcttaggttgccatggtacataggcacattgacattcctccccttaacacagagcag 280

                                                                       
Query: 301 gactttcgagggcattctgcaactaaatatcaacagatgaggcatggatgggatgggaag 360
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 279 gactttcgagggcattctgcaactaaacatcaacagatgaggcatggatgggatgggagg 220

                              
Query: 361 aagagggaactgaaagggt 379
           |||||||||||||||||||
Sbjct: 219 aagagggaactgaaagggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)