BAC Information

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BAC

Clone NameMSMg01-313G14
Chromosome11 (Build37)
Map Location 37,518,811 - 37,680,612
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2, LOC100039148
Downstream geneLOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313G14.T7 (MSMg01no313_g14.b1)MSMg01-313G14.TJ (MSMg01no313_g14.g1)
ACCAG435347AG435348
length1,2891,292
length of high quality
(start - end)		752 (41 - 792)385 (79 - 463)
definitionCHROMAT_FILE: MSMg01no313_g14.b1 PHD_FILE: MSMg01no313_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:04 2005CHROMAT_FILE: MSMg01no313_g14.g1 PHD_FILE: MSMg01no313_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,518,811 - 37,519,546)(37,680,234 - 37,680,612)
sequence
CCTTTTTTNNNNNNNNTTCAGTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCATTTCCTCACTCTTTACTTTGACTTAATGTTCCCAGA
TGAGACATATTTCCTGTCTTCTTGTAAAAAATCATCTTGGTTATTTTTCC
ATAATTGAAAATATATTCTGTTCATATCTTCCACCTTACCTAAGCTCTTG
ATATGGTTTTTACTTTCACAATATGAGGTCCACAGCACCTTGTGACTAGT
ACGATTTCTATCTTCTCAATTAGGTCACAAACAGAAGATGTAATCTTTCT
ATACTTTTTTTTTTCAACAACCTCAGCATAGACTTACTTGTTTTACTTTT
CATTAGCAAAATCTTTCAACTTTTCTTTTCTAAGACATATAATAGACCTC
GTTGGGAATACTTCATTCAATAGTATTACTGCTTTATACCTTGGAAACAT
TATTAAGATTAGGGTTATTCAATCATTTGTATTCTGATTCATAACAATGT
TCTATTAATACCAACAGTGGCTACTAGGATGCCAGGGAGTAGTTGTGCAT
ACATGGTGGATGCACTTGGTTAAGAGAATACCCACAAGCTGGAAACCAGT
TGCATCAGTGAGGAGTCCACCATGCTATTCAGCTGACACACAATTGAAAA
CTCCTAAATTGTTCCTGAAATTTTCACGTAGTATTTTCCATTCAAAGTTG
CCTGAATCTAGAAATTAAAAGAGTGGACAGCTGAACTACTGAATTCTTTT
GTAATATTGAATGTTATGAGTCCCTATTCATGGACATGACAAGTTAGGTT
TCCTCTTCATGTTCTATAGGAGAATTACCCATGGGTTTTCAATGACTTCT
GGTTATTTCCACAGCCCCTGGAAAAACACTCAAATCTCTGGTTCATCCTC
AAAAGACATCTTTATCTCTGTGTCTAAAGTCACCTTTCCTTTCTCTTATA
TAATTACCAGTCACTCAATATAGGGTACCTTCAAATTCAAAAACTCCCCT
TTTGGAATCTTTACTAAAATCCCTGACTCAAAAAGGCTGGTTTAAAAACT
ACAGAATACTTGCCGTTAACTTTCCTCCCCTCCTCTCCTCCCCCCAAAAA
TGTGAAAATAAAAATTTTATTTAAACCCTAATTTAAAGGGCCAACAAATA
CTCTTCTCATATTATAAAAGGGTTATAAAAAAAATTACCCTCACATCTGA
TAAACCCCTTAATAATAATATTTTATAATTTTATCTGGTTCTACCACTCT
TCGGTACACAAAAGTGTCAAGCGCCTTTTTATAATAAAT

NNGGTTTTNNNNNNNACTGAAGTGAGGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCTCCTCGTCTATAAACT
TCTATTTCTTTTAAGACTTGTTGCAACTCCATCTCCTACATTTCATATTT
TGTTTTTCTTCAGAGCCCAGACCAGATCAGAGCCATGTGTGTCCAGGCAT
TTAGCATGCCATCTGCTAATCTCCATGGCTACGTTTACAACGTCATTACA
TAATTACCTGTTTATTGTTTCCACTCCCCCACTAGAGTGATGTTTTTGTT
TCTGTTTTTAAATAATTGACTGTTTTTTGTTATGGCGATACTAATTGGTT
CTTTTTTTAAATAGCCACCTGGTATAATTCCTCTTTGCAGCATTTTTAAG
AATAATTTCTATTCTATATTTTAGATGTGATTTCATCATTTCTCTTTGCA
ATATGCCAATCTTTTTCAGTTTACAGTCATCTTTGTTGTGTACATTAAAA
ATGATACATTTCCATCCTACTGGAGTAAATTGCTCACCTGGTTCTTGGTT
TTCTATTTTCTAATCTTGGAATATTTTCTAAATAGATATAGAATTGGGGA
TCTAAATTTCATCTTCATTGGTAACTTTCCTTCAACCTGTAGCAATCTGC
CTGTTAACTGGTCCTCCTAGTCTTATCTCTATGGCTTAGAATTTCTGTCT
TATGCCCATAACTTGTCCCAAGACCGGAGGGCAGCCTGGACACAGAGACT
GTGACTTTTAATTTAGGTTCTGGCATCCCTCTCTCACATCCTAGGATGAG
AAGGACTGGACCAGTGTGTATTTTTAGAAAATGAATTTTGATGCCCCAGG
AAGGACAGGGCAACTTTAGCTCCAGTACCTCAGTAGATGTATAACTGTCA
CCCTTTCTTTCTATTATGAATTTACAAGCTGAGCCTCAGCTAGCACTTTG
TATACATTTTGCTCCACTTTTTGGTTTCAAATTCCTTATTCCATTTTCTC
AGAAGTTTGCCAAGTTTTGGGGGGTGGGGGCCCCCCTGGATGGGTTCATA
TAAACTTGGGAAATTTGGGGGGAAACAATGATTGGGGGCCCCTGAGGAGA
CACCCGGGGGCGGCAATTTTTATTTAGGAGCCCACTTCTTCTTTTCCTCT
TGTAAAAGGGGCCCCATTTTTGCCGACAATTTTTTTTTGGGGAAACAAGA
AATTTAAGCCTCCCGCCTTTTGTCCCCGTGGTGGCGTTATAATATCACAC
GTTTCGCGGGGTTCCGTAAATTCTTCTACCTACCAACTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_g14.b1 MSMg01no313_g14.b1 CHROMAT_FILE:
MSMg01no313_g14.b1 PHD_FILE: MSMg01no313_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:04 2005
         (752 letters)



>mm_chr11_37518595_37519746
          Length = 1152

 Score = 1361 bits (704), Expect = 0.0
 Identities = 728/736 (98%)
 Strand = Plus / Plus

                                                                       
Query: 17  ggaattcatttcctcactctttactttgacttaatgttcccagatgagacatatttcctg 76
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ggaagtcatttcctcactctttactttgacttaatgttcccagatgagacatatttcctg 276

                                                                       
Query: 77  tcttcttgtaaaaaatcatcttggttatttttccataattgaaaatatattctgttcata 136
           ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tcttcatgtaaaaaatcattttggttatttttccataattgaaaatatattctgttcata 336

                                                                       
Query: 137 tcttccaccttacctaagctcttgatatggtttttactttcacaatatgaggtccacagc 196
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 337 tcttccaccttacctaagctcttgatatggtttttactttcacaatgtgaggtccacagc 396

                                                                       
Query: 197 accttgtgactagtacgatttctatcttctcaattaggtcacaaacagaagatgtaatct 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 accttgtgactagtacgatttctatcttctcaattaggtcacaaacagaagatgtaatct 456

                                                                       
Query: 257 ttctatacttttttttttcaacaacctcagcatagacttacttgttttacttttcattag 316
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttctatactttttttttttaacaacctcagcatagacttacttgttttacttttcattag 516

                                                                       
Query: 317 caaaatctttcaacttttcttttctaagacatataatagacctcgttgggaatacttcat 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 caaaatctttcaacttttcttttctaagacatataatagacctcgttgggaatacttcat 576

                                                                       
Query: 377 tcaatagtattactgctttataccttggaaacattattaagattagggttattcaatcat 436
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcaatagtattactgctgtataccttggaaacattattaagattagggttattcaatcat 636

                                                                       
Query: 437 ttgtattctgattcataacaatgttctattaataccaacagtggctactaggatgccagg 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ttgtattctgattcataacaatgttctattaataccaacagtggctactaggatgccagg 696

                                                                       
Query: 497 gagtagttgtgcatacatggtggatgcacttggttaagagaatacccacaagctggaaac 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gagtagttgtgcatacatggtggatgcacttggttaagagaatacccacaagctggaaac 756

                                                                       
Query: 557 cagttgcatcagtgaggagtccaccatgctattcagctgacacacaattgaaaactccta 616
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 cagttgcaacagtgaggagtccaccatgctattcagctgacacacaattgaaaactccta 816

                                                                       
Query: 617 aattgttcctgaaattttcacgtagtattttccattcaaagttgcctgaatctagaaatt 676
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 817 aattgttcctgaaattttcatgtagtattttccattcaaagttgcctgaatctagaaatt 876

                                                                       
Query: 677 aaaagagtggacagctgaactactgaattcttttgtaatattgaatgttatgagtcccta 736
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 aaaagagtggacagctgaactactgaattcttttgtaatattgaatgttatgagtcccta 936

                           
Query: 737 ttcatggacatgacaa 752
           ||||||||||||||||
Sbjct: 937 ttcatggacatgacaa 952


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 752
Length of database: 1152
Length adjustment: 10
Effective length of query: 742
Effective length of database: 1142
Effective search space:   847364
Effective search space used:   847364
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no313_g14.g1 MSMg01no313_g14.g1 CHROMAT_FILE:
MSMg01no313_g14.g1 PHD_FILE: MSMg01no313_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:04 2005
         (385 letters)



>mm_chr11_37680030_37680814
          Length = 785

 Score =  702 bits (363), Expect = 0.0
 Identities = 375/379 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   tctcctcgtctataaacttctatttcttttaagacttgttgcaactccatctcctacatt 64
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 583 tctcctcgtctataaacttctatttcttttaagatttgatgcaactccatctcctacatt 524

                                                                       
Query: 65  tcatattttgtttttcttcagagcccagaccagatcagagccatgtgtgtccaggcattt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 523 tcatattttgtttttcttcagagcccagaccagatcagagccatgtgtgtgcaggcattt 464

                                                                       
Query: 125 agcatgccatctgctaatctccatggctacgtttacaacgtcattacataattacctgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agcatgccatctgctaatctccatggctacgtttacaacgtcattacataattacctgtt 404

                                                                       
Query: 185 tattgtttccactcccccactagagtgatgtttttgtttctgtttttaaataattgactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tattgtttccactcccccactagagtgatgtttttgtttctgtttttaaataattgactg 344

                                                                       
Query: 245 ttttttgttatggcgatactaattggttctttttttaaatagccacctggtataattcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttttttgttatggcgatactaattggttctttttttaaatagccacctggtataattcct 284

                                                                       
Query: 305 ctttgcagcatttttaagaataatttctattctatattttagatgtgatttcatcatttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctttgcagcatttttaagaataatttctattctatattttagatgtgatttcatcatttc 224

                              
Query: 365 tctttgcaatatgccaatc 383
           |||||||||||||| ||||
Sbjct: 223 tctttgcaatatgctaatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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