BAC Information

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BAC

Clone NameMSMg01-313L16
Chromosome11 (Build37)
Map Location 49,697,998 - 49,784,097
singlet/doubletdoublet
Overlap geneMapk9, Rasgef1c
Upstream geneEG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2
Downstream geneRnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313L16.T7 (MSMg01no313_l16.b1)MSMg01-313L16.TJ (MSMg01no313_l16.g1)
ACCAG435576AG435577
length1,2061,246
length of high quality
(start - end)
377 (88 - 464)387 (71 - 457)
definitionCHROMAT_FILE: MSMg01no313_l16.b1 PHD_FILE: MSMg01no313_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:46 2005CHROMAT_FILE: MSMg01no313_l16.g1 PHD_FILE: MSMg01no313_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,697,998 - 49,698,367)(49,783,721 - 49,784,097)
sequence
NAAATAANNNNNNNGGTCACTGGGCGCTATAGACTCCTATANGGAGAGGA
TCCGCGGAATTCCTCAGATGTTCTAGAAGCATTCAGAAGAACACAGAAGA
AATATTCTAGAGAGTAGGGTTTCATTCTTGAATACCCTCTGATTTAAAAC
TGCTCACCTGAAATTGATACTTTCAGATCCTGATCTGTAATTTACTCAAG
ATTTCATAAGAGGCTGAGTTCTCTGTGTTGTTGCAGAAATGGAGTTGGGA
CGGTCATACCGTGGCTACCTGCGCTCAGAGCATTTTCTCCCTTGAGCTTA
TTTTGTTAACGATTCATATCTTGTGTTCAGTTACTTTGGGAGCTATGGAG
TGTGTTCTAGGAGGAAACTTGATAGCTTTTATGAAAAGTACCATCTAATA
TGTGATTTTGTCTGCACCCGTTGCATCCTAATGGTTGGTCTGATCATTGG
AACCTTTTTTTTTTTACCCCCCCCCGAAANCCCCCCCCTCCCCCAAAAAA
AAAGGGGAGANGGANANNNNCAGGNACAGAGNGGAAAGGCNAGNGNGGGN
GGGGGCNGAGACACCCGNCNANGGCNNCAGGNNANNGGGCCCCGGGAGCC
CGAAGNCCCACAGNGCACCAGCCAGCACCANGCNGNGCCCNNCCNGCNGA
NGCACANCCNNAAANGACNNCCCGGAAACNNAAGGAGGAAANACAGAAAG
GAGCGGNANCACCNGCCCCACACNGNAAGGGGAGNGNGCCAAGAAAGAGG
CCCACCCCGCNCCCACCGCCCAGGAGACAGCCGCGAGCGGACCCAGGCGC
CCCCCAAGAGCGGCNCCCACCCCCCCCCAAANCCGCCAAACCAAAGAGCC
CGANGNGGAAGGAGACCGGGCAGGCGGGCCAAGGCCCCGAGCCCAAACCC
CCCCCAACCAGCAAGGGCACCAAGACCCGCCACAAGCCCCCAAAAAACCG
CCCCCCACACCCGGCCCCCCCCCGGACCAAAACGCACGCACCAGGAAAAA
CACCGGNCACACCAAACACCGCAACACACCCCAGACCACGAAAACCCAAC
ACACGCCCACCCAACAACCCCAACCACCCCCCACCAACCAACCCCCCAAC
ACACCACGCCCCACCCCAACAACCGCCCACACCACCCCACCCACCCCCCC
CCCAACCCGACCCCACACAACACCCCAAACCACCGCCCCACCCAGCCCCC
CCACCC
NNNCCGCTATGCGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGAGGGTGTTTTTTTTTTCTCCTCTTTTTG
GCTCCCCTACCATCAAGTGAGCCCTTTCATTTTATCATGTGTCTTAGCCA
TAAAAGGCCCACAGCAACAAAGTCAACCAATCAAGTACCGAAACCTCTGG
GGCTTGCAGGCAAAACTTGAACCTTTTCGAGTTATAACTTGGTTGTGTCA
GGTATTTGGTTACAGTGACAGAAAGCTGAAGAGTATATTGATACGGCCCA
CCTGAAATAATATGGGCGGAGCTATAAAGGCTGAAACTTCTAAGCTGCGA
AGGCTCTTTCCTACCTTCTCCCTGCTGCTGTGAGCAGTGAGTGATTGTTG
GGCTGCCCCACGCAGGGCTGTCCTATAGTTGCAGAAGTTCCCTGTTGTTT
TTTTTTCTCCCCCCCCAAGGAGACAGGCCCCCCTTAAAAAAAAGAGGGGG
GGGNATCNNATGGCCNCNACCCTTGGGCCAGCAACCCTGTTTACCTCCAG
AATGAAGAATTTGGCTGTTTTCACTTTGGCCCAAGTCTTCTTCAGCCTGG
AGACAGGGCTCATGTTCATGCCAGCTGGAAGAAGGTAAATAGAGCTGGGC
GGGCTCCTTCAGCCTGGGCAGCCCCATAAGAAGAGTGGCCTTGGTGTGCC
CTGAAGGTGGCTGAAGGGTACCTGAAAGGGCAGGGTACTGGTGTACATTG
TACTGAGGTGGACTTGTTTGCATGTAACCCTGACTGACCCACTTACACGG
CCCCCCCAAAAATAGCATCCAAACTTATTTTGGTCCCACCCTCGTCTGTG
GGTGAACCCCTGCAAAATTCTTCCAAGCACCCCCGGAATGTACACTTTCT
TTAAAAGGTAAACCTCTCTACTAGCCCTTGTGACCTGCCAACTAACTCCA
CTCTCCCTCCAAATAAAACCCTAAACTTGCTCCCCTCCTGCAATACCTTT
TCATTTTCTCCTCTCCGACTCCTCTCACCCGCTACTTTCTCATCTTACCC
AATCCACTCACACAAATCTCTTTAATATGTCTCTTCCCCCCCATTTATTC
ACCCCGTTATCTACTTCACACATCCCTCACTACACTTCCCTCGACCTCCT
CTTTATAACATCTCCTATCCTCATACTTCAATTCACTCTTATACATGACC
CAACTACTTATCTCTTTCCGACTTCCACATCTTTCCAACACTAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_l16.b1 MSMg01no313_l16.b1 CHROMAT_FILE:
MSMg01no313_l16.b1 PHD_FILE: MSMg01no313_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:46 2005
         (377 letters)



>mm_chr11_49697798_49698574
          Length = 777

 Score =  654 bits (338), Expect = 0.0
 Identities = 362/370 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaacacagaagaaatattctagagagtagggtttcattcttgaataccctctgatttaa 60
           |||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||
Sbjct: 201 agaacacagaagaaatattctagagagtaggggttcattcttgaatattttctgatttaa 260

                                                                       
Query: 61  aactgctcacctgaaattgatactttcagatcctgatctgtaatttactcaagatttcat 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 261 aactgctcacctgaaattgatactttcagatcctgatctgtaaattactcaagatttgat 320

                                                                       
Query: 121 aagaggctgagttctctgtgttgttgcagaaatggagttgggacggtcataccgtggcta 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaggctgagttctctgtgttgctgcagaaatggagttgggacggtcataccgtggcta 380

                                                                       
Query: 181 cctgcgctcagagcattttctcccttgagcttattttgttaacgattcatatcttgtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgcgctcagagcattttctcccttgagcttattttgttaacgattcatatcttgtgtt 440

                                                                       
Query: 241 cagttactttgggagctatggagtgtgttctaggaggaaacttgatagcttttatgaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagttactttgggagctatggagtgtgttctaggaggaaacttgatagcttttatgaaaa 500

                                                                       
Query: 301 gtaccatctaatatgtgattttgtctgcacccgttgcatcctaatggttggtctgatcat 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaccatctaatatgtgattctgtctgcacccgttgcatcctaatggttggtctgatcat 560

                     
Query: 361 tggaaccttt 370
           ||||||||||
Sbjct: 561 tggaaccttt 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no313_l16.g1 MSMg01no313_l16.g1 CHROMAT_FILE:
MSMg01no313_l16.g1 PHD_FILE: MSMg01no313_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:46 2005
         (387 letters)



>mm_chr11_49783521_49784307
          Length = 787

 Score =  644 bits (333), Expect = 0.0
 Identities = 366/377 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagggtgttttttttttctcctctttttggctcccctaccatcaagtgagccctttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 577 tgagggtgttttttttttctcctctttttggctcccctaccatcaagtgagcaatttcat 518

                                                                       
Query: 61  tttatcatgtgtcttagccataaaaggcccacagcaacaaagtcaaccaatcaagtaccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tttatcatgtgtcttagccataaaaggcccacagcaacaaagtcaaccaatcaagtaccg 458

                                                                       
Query: 121 aaacctctggggcttgcaggcaaaacttgaaccttttcgagttataacttggttgtgtca 180
           ||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct: 457 aaacctctggggcttgcaggcaaaaatcgaaccttttcgcgttataacttggttgtgtca 398

                                                                       
Query: 181 ggtatttggttacagtgacagaaagctgaagagtatattgatacggcccacctgaaataa 240
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 397 ggtatttgattacagtgacagaaagctgaagagtatattgatatggcccacctgaaataa 338

                                                                       
Query: 241 tatgggcggagctataaaggctgaaacttctaagctgcgaaggctctttcctaccttctc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tatgggcagagctataaaggctgaaacttctaagctgcgaaggctctttcctaccttctc 278

                                                                       
Query: 301 cctgctgctgtgagcagtgagtgattgttgggctgccccacgcagggctgtcctatagtt 360
           ||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||
Sbjct: 277 cctgctgctgtgagcagtgagtgagcggtgggctgccccacgcagggctgtcctatagtt 218

                            
Query: 361 gcagaagttccctgttg 377
           |||||||||||||||||
Sbjct: 217 gcagaagttccctgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)