NCAAATCTNNNNNNAATCATTGGGCGCTAAGACTACTAAGGGAGAGGATC
CGCGGAATTCCAGAACAAGCTATCTACCTTCACAATTTGTAATCTCTGAG
TTTGAACATCCTATACCTTATAAGCCTTTGCCATTTTCATCTCTTCACAT
TACATTCATGCAAAAGTTATTCCAGACCTTGCAATAGCCCTCTAATAACT
TTAACCTTGTTATGCCCATCCTTCAATGTCCATTCCCAAAATAGTTTATT
GTCAGTTTAGTTTTTCCATTTGTTCCCAACAAACTCTGATCTCTTCTTAT
ATCTACCAAAGATTGTATTCCTTTAGATTTATATCTTTCTTATAAAATTA
ATATCTTGTTTCTTATAACATTCATAGTGGCTGTCTTCCTCTCACTGCTA
TGATAAACTCCATAAAAAGAGGGACACTAATTTTTGTCTTTGTTCTTTGA
TGAAAACTCACAGTTTCATTGAGGCTCAACATATTCATTATGTTGCTGAA
CTAGACTTTGGAGGCTTAGCCTCAATGACTTCATTGTTTTGAGAGAATGT
TCAGAATCAACTCATATCCATGTCTATTGATTGCCTGCATTGCTGACATT
TGGCAATCACAGATACTATAGAGTTGGAGGAATTTGCTGCAGTTTAACTA
TAGGAATTTCTCTTATGGGGGAGGTCAGTTATTAAAAGAATTTACTGCTC
TTGCAGAGGACTGCGTTTAGTTGATATGGTGGTTCACAACCATTTCTGCC
TAGGGGATTTGATGCCTCCTAAATGCCTCTGTGAATGGCAGGAACACACA
TGATACACATTTATGTTGGCAAAACCCTCATGCACATGAAAAATGCAATA
AATAAGTCTTTATGAAAGATGGGAACTTCTGTTATAGAAATGACAGTAAG
TGCCTGCTCAAATTGATGCAATGTTTCAGCTGTTTGCATACCACCTACAT
TGGTTTGTAAAATCCAGNTGGACCTGCTCTGCACTTTTAACTACTTTCCT
AACTATAATGATTTTTAAACTTTTTTGGTTTATAAGGAAAAAAATGGCTA
ACCTTTAAAAAACCCAATTAAAAAAAAAAAGGGGGTAAAAAATAAACGGA
AAAGAGAAAACCCCCTGTCCCTATAGGGTTGAAAAGTTAAAACCCCCCCC
CCACAATGGGCGGGGAATTCTTTATAAAAAAACTCTTTGGGGCTTGAAAC
TCTCATTGAGAAAATCCTTTTTGGAAAAAAAAAAAAA

NAATTTANNNNNNAAATGAAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACCCCCTTCATTCCTGT
CTCATAATTCCTTATCTTATTCTCTTAATGCCTGAAAATAAGCCGTCAAT
AATTCAAAATGTTTAGCTCCTATACTAAAGAGGCCTTAGCTCATATCATA
AGACCAGAGCTTTAAAAACTTATTTTTCTCCATCCCCTTTGTTTATCCAA
GTTCTTTTAAAGTTATTTTTAAATATTTAAACATCTTATGCATTTAGGAA
CCAGAATAAAATTATTTGATACACACAAACATTGTTTAAGAATCCTCACA
GTAAATTAGTGTTTTTAGTCATGTTCCCGAAATCTGTTCATCTTAGACCT
TAGAGTCAAAGGCCGTTGAACAATGTGTTTTCATTTTCCTCTCCTCCTAG
TGCTACATTTTCTTTATTCAGCATACTAATGACACCATAATTATTTGTCA
TAAAGCATTTTTTGGCTTGGATTATTTTAAATAAATAATTCAGAAAACAC
TGCATATAAGTCCTGATTTTAATCATTCAGCCCCAAGTCATAGTGTTTTA
CTGCTAACTCCATTTATGCATTCTTAGATTGCCTATTACAGTAGCTGTTG
TCACCTGTCAAATTAGATTAAGTAAAATTAGCTAAAATTAACTTAAACAA
TAACAGTTGAGTTCAGGAGCCACATATGAATGGCTATTTATATATTGAAA
ATCTACATATCAGTTAAACATCCATCATTGGAGAATATTGTAGAAGAGCA
TGTTAATCTAAACTCTGTCTTCTCCTATAGCAAAGGTTATTTTAAAGTAG
TATCTGACAATATTAATATTATCACACCAAGAAATGAACAAGAATTGTTT
AGTAATATCAAATATACACCTGGCATTAAATTTCCCCTACCATAATCTTC
CTGCTTATCATGAGAACTGAAGAAAAATCCTAAGTTTCAGCATAAATCAG
AGTTTGTATGCAAAACCTGGTTAAAACCCCCCCCCCCCCCCCCCCCCCCN
NTNNATATAAGATAATAAAAAAAGAGAAAAAATTTGTTTTCGGAAACACA
TTTTTTTATAAATACCCCCCCCCAAAAGAGGGGGGCCCCAATAAAGGTTA
AGGGGATGGAATCTCCTTTTTCAAATTTTGGGAGAAGGGAACCTTTCACC
CCCCCAAAAAAAATTTTTTTTTTTTTA

Query= MSMg01no313_m22.b1 MSMg01no313_m22.b1 CHROMAT_FILE:
MSMg01no313_m22.b1 PHD_FILE: MSMg01no313_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:56 2005
         (701 letters)



>mm_chr11_42222176_42223276
          Length = 1101

 Score = 1332 bits (689), Expect = 0.0
 Identities = 698/701 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taactttaaccttgttatgcccatccttcaatgtccattcccaaaatagtttattgtcag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 taactttaaccttgttatgcccatccttcaatgtccattcccaaaatagtttcttgtcag 260

                                                                       
Query: 61  tttagtttttccatttgttcccaacaaactctgatctcttcttatatctaccaaagattg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tttagtttttccatttgttcccaacaaactctgatctcttcgtatatctaccaaagattg 320

                                                                       
Query: 121 tattcctttagatttatatctttcttataaaattaatatcttgtttcttataacattcat 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tattcctttagatttatatctttcttatgaaattaatatcttgtttcttataacattcat 380

                                                                       
Query: 181 agtggctgtcttcctctcactgctatgataaactccataaaaagagggacactaattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggctgtcttcctctcactgctatgataaactccataaaaagagggacactaattttt 440

                                                                       
Query: 241 gtctttgttctttgatgaaaactcacagtttcattgaggctcaacatattcattatgttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctttgttctttgatgaaaactcacagtttcattgaggctcaacatattcattatgttg 500

                                                                       
Query: 301 ctgaactagactttggaggcttagcctcaatgacttcattgttttgagagaatgttcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgaactagactttggaggcttagcctcaatgacttcattgttttgagagaatgttcaga 560

                                                                       
Query: 361 atcaactcatatccatgtctattgattgcctgcattgctgacatttggcaatcacagata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcaactcatatccatgtctattgattgcctgcattgctgacatttggcaatcacagata 620

                                                                       
Query: 421 ctatagagttggaggaatttgctgcagtttaactataggaatttctcttatgggggaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatagagttggaggaatttgctgcagtttaactataggaatttctcttatgggggaggt 680

                                                                       
Query: 481 cagttattaaaagaatttactgctcttgcagaggactgcgtttagttgatatggtggttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagttattaaaagaatttactgctcttgcagaggactgcgtttagttgatatggtggttc 740

                                                                       
Query: 541 acaaccatttctgcctaggggatttgatgcctcctaaatgcctctgtgaatggcaggaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaaccatttctgcctaggggatttgatgcctcctaaatgcctctgtgaatggcaggaac 800

                                                                       
Query: 601 acacatgatacacatttatgttggcaaaaccctcatgcacatgaaaaatgcaataaataa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acacatgatacacatttatgttggcaaaaccctcatgcacatgaaaaatgcaataaataa 860

                                                    
Query: 661 gtctttatgaaagatgggaacttctgttatagaaatgacag 701
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gtctttatgaaagatgggaacttctgttatagaaatgacag 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no313_m22.g1 MSMg01no313_m22.g1 CHROMAT_FILE:
MSMg01no313_m22.g1 PHD_FILE: MSMg01no313_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:56 2005
         (388 letters)



>mm_chr11_42363522_42364309
          Length = 788

 Score =  743 bits (384), Expect = 0.0
 Identities = 387/388 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattttttggcttggattattttaaataaataattcagaaaacactgcatataagtcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cattttttggcttggattattttaaataaataattcagaaaacactgcatataagtcctg 529

                                                                       
Query: 61  attttaatcattcagccccaagtcatagtgttttactgctaactccatttatgcattctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 attttaatcattcagccccaagtcatagtgttttactgctaactccatttatgcattctt 469

                                                                       
Query: 121 agattgcctattacagtagctgttgtcacctgtcaaattagattaagtaaaattagctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agattgcctattacagtagctgttgtcacctgtcaaattagattaagtaaaattagctaa 409

                                                                       
Query: 181 aattaacttaaacaataacagttgagttcaggagccacatatgaatggctatttatatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aattaacttaaacaataacagttgagttcaggagccacatatgaatggctatttatatat 349

                                                                       
Query: 241 tgaaaatctacatatcagttaaacatccatcattggagaatattgtagaagagcatgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tgaaaatctacatatcagttaaacatccatcattggagaatattgtagaagagcatgtta 289

                                                                       
Query: 301 atctaaactctgtcttctcctatagcaaaggttattttaaagtagtatctgacaatatta 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 288 atctaaactctgtcttctcctatagcaaaggttatcttaaagtagtatctgacaatatta 229

                                       
Query: 361 atattatcacaccaagaaatgaacaaga 388
           ||||||||||||||||||||||||||||
Sbjct: 228 atattatcacaccaagaaatgaacaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)