BAC Information

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BAC

Clone NameMSMg01-315F11
Chromosome11 (Build37)
Map Location 51,074,928 - 51,075,600
singlet/doubletsinglet
Overlap geneBC049762
Upstream geneMaml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699
Downstream geneClk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315F11.T7 (MSMg01no315_f11.b1)MSMg01-315F11.TJ (MSMg01no315_f11.g1)
ACCAG436013AG436014
length718723
length of high quality
(start - end)
678 (41 - 718)560 (75 - 634)
definitionCHROMAT_FILE: MSMg01no315_f11.b1 PHD_FILE: MSMg01no315_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:46 2005CHROMAT_FILE: MSMg01no315_f11.g1 PHD_FILE: MSMg01no315_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTTGCTTCCCGCCCACTCCATATGCTCTGCAGAGTGCACTGGGAATTGG
GATGCTTTCAACATTGTTTGACTGAATCTTTGTTACTCCTGTGCTGTTTG
ACTTTCTCTTCAGAAGTGTTAGGAACCCTGGAGGAAACTGGGATATTGTC
CATCTTGGGCAGTATGGGATGCCTGAGAGATCCATTGTGACTCATTCATG
GTGTGGCCTTTAATCAACTTTGCTAAATGTGAAGGGATTCATTGTTTCAT
AATGGGAGCTTCAGAGACAAATCACCATGAAAAGAGCCTTTTCAAGACAG
ACCCTTTTGGTCTTGCCAAAAGATGGACTCAGAATACTTTTCTCTAACTG
ACTAAGAAAAAACCACCCCTGCTTTTTACTTTGTTGCATGAATGGAGGCA
GTAAGTATGACAATGAAACCATAAGCTAGCAAGGTTTGAATGGTATTTTC
AGGAGTTAAATTTGTCATTAAAGCAAGGAGCTAAGAATCACCTCTTAGAG
TTGTCTAGATGACTAAGACTGTCTATAAAGTGATTGGCATAGAGTATTTA
ATTAATCTGGTTATGACAGCTCATATTTATGCTTCAAGCTCTTGGAGGAA
GGAGATAAGAGATAGGACGACCAGAAGAAGTTCAACCCTACTGGGTTAGA
CAGTAATTATGGTGTTGG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCTATTGGAAACCGAACTACATTT
CTTGTTTTGTTTTTTATAGGTTATTTTTCCTTGCTTGTTTTGAGACAGGC
TCTTTCTAGGCTGGCCTTAAATTCCCTCAGTAGCTAAGGATGACCTTGAA
GTAGATAAGGAGACCCTGAAGATGCTATGGATGACCTTGAACTCCCTATC
TCTTTGTCTCTACCTCCCAAGAGCTGGAAGTACTGTCATGAGCCCTGATG
CTCAGTGCTGGGGGTTTAATGCAGTGTTGGGGATTGTCACGTGTGCTTGG
CAAGTACTCCTCAAAGTGAGCTACGGACTCAGGATGGCTCAGCCATAAAG
ACATGGGCTGCCAAATCCCACAACATGAGCTCAATTGTTGTCCTGGGACT
CACATGATAGAAGGAAAGAATTAACCCCCAGCAAGTTGTCCTCTGGCCTC
CACATATGTGCCATGGAACATGAACCCCCTCACACACACACACACACACA
CACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGA
GAAAGAGACAGAGAGAGAGAACCCACAGAGACATATACACAGTCATGTAC
ACACATAATACATACACATATGCTAAAATGTAATTTAAACAAAGAACAAC
TGAGTGTTACCCTCAGCCCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_f11.b1 MSMg01no315_f11.b1 CHROMAT_FILE:
MSMg01no315_f11.b1 PHD_FILE: MSMg01no315_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:46 2005
         (678 letters)



>mm_chr11_51074724_51075800
          Length = 1077

 Score = 1197 bits (619), Expect = 0.0
 Identities = 660/677 (97%), Gaps = 7/677 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttgcttcccgcccactccatatgctctgcagagtgcactgggaattgggatg 64
           |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagatgcttcctgcccactccatatgctctgcagagtgcactgggaattgggatg 264

                                                                       
Query: 65  ctttcaacattgtttgactgaatctttgttactcctgtgctgtttgactttctcttcaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttcaacattgtttgactgaatctttgttactcctgtgctgtttgactttctcttcaga 324

                                                                       
Query: 125 agtgttaggaaccctggaggaaactgggatattgtccatcttgggcagtatgggatgcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtgttaggaaccctggaggaaactgggatattgtccatcttgggcagtatgggatgcct 384

                                                                       
Query: 185 gagagatccattgtgactcattcatggtgtggcctttaatcaactttgctaaatgtgaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagagatccattgtgactcattcatggtgtggcctttaatcaactttgctaaatgtgaag 444

                                                                       
Query: 245 ggattcattgtttcataatgggagcttcagagacaaatcaccatgaaaagagccttttca 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 ggattcattgtttcataatgggagcttcagagacaaatcaccatgaaacgagccttttca 504

                                                                       
Query: 305 agacagacccttttggtcttgccaaaagatggactcagaatacttttctctaactgacta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 505 agacagacccttttggtcttgccaaaagatggactcagaatacttttctctaactgatta 564

                                                                       
Query: 365 agaaaaaaccacccc---tgctttttactttgttgcatgaatggaggcagtaagtatgac 421
           ||||||||  |       || |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaaaaagta----agttgttttttactttgttgcatgaatggaggcagtaagtatgac 620

                                                                       
Query: 422 aatgaaaccataagctagcaaggtttgaatggtattttcaggagttaaatttgtcattaa 481
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgaaaccgtaagctagcaaagtttgaatggtattttcaggagttaaatttgtcattaa 680

                                                                       
Query: 482 agcaaggagctaagaatcacctcttagagttgtctagatgactaagactgtctataaagt 541
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 agcaaggagctaagaatcacctcttagagttgtctagattactaagactgtctataaagt 740

                                                                       
Query: 542 gattggcatagagtatttaattaatctggttatgacagctcatatttatgcttcaagctc 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gattggcatagagtatttaattaatctggttatgacagctcatatttatgcttcaagctc 800

                                                                       
Query: 602 ttggaggaaggagataagagataggacgaccagaagaagttcaaccctactgggttagac 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttggaggaaggagataagagataggacgaccagaagaagttcaaccctactgggttagac 860

                            
Query: 662 agtaattatggtgttgg 678
           |||||||||||||||||
Sbjct: 861 agtaattatggtgttgg 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1077
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1067
Effective search space:   712756
Effective search space used:   712756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)