Query= MSMg01no315_k02.b1 MSMg01no315_k02.b1 CHROMAT_FILE:
MSMg01no315_k02.b1 PHD_FILE: MSMg01no315_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:10 2005
(676 letters)
>mm_chr11_9173719_9174794
Length = 1076
Score = 1261 bits (652), Expect = 0.0
Identities = 667/672 (99%)
Strand = Plus / Minus
Query: 5 gaattccaaaaataccaatttcagcaacttagcctgttatcaaatgcttcactatcttat 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gaattccaaaaacacgaatttcagcaacttagcctgttatcaaatgcttcactatcttat 817
Query: 65 gagaaaggaaaacgggaacatgatggagtgagtgttctgttatcctttctgagaactcaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gagaaaggaaaacgggaacatgatggagtgagtgttctgttatcctttctgagaactcaa 757
Query: 125 tagtgtgggtgctttgttacaagagccttttgcttctaaagcaatgccccctcacagggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tagtgtgggtgctttgttacaagagccttttgcttctaaagcaatgccccctcacagggt 697
Query: 185 cttcttcttctctccctagaagggtgaaaaggattcggcccatgatagcaaagtgtaacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 cttcttcttctctccctagaagggtgaaaaggattcggcccatgatagcaaagtgtaacc 637
Query: 245 ttgacttcctcgaactagggcagaagaaatacctgtcaggcaatgaaagtttacgaaagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ttgacttcctcgaactagggcagaagaaatacctgtcaggcaatgaaagtttacgaaagg 577
Query: 305 gcattctgcattcttagaaagatctcagtctcatggagactctgaacagtgctgaggaca 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 576 gcattctgcattcttagaaagatctcagtctcatggagactctaaacagtgctgaggaca 517
Query: 365 ggcaagcacaccttccagtgcccttatgcacagtgtcctgggggcacctccagtctgaca 424
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggcaagcagacgttccagtgcccttatgcacagtgtcctgggggcacctccagtctgaca 457
Query: 425 atcatgggattagtgtcagtgagaaagttcaactgtcccatgaaatggcttgacccagac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atcatgggattagtgtcagtgagaaagttcaactgtcccatgaaatggcttgacccagac 397
Query: 485 cacgctgcaggttctgctaaacagcagaatatgacataatttcaccagcaaggcacaaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cacgctgcaggttctgctaaacagcagaatatgacataatttcaccagcaaggcacaaga 337
Query: 545 actcttagtgggtgacaaagaaaaacagagctggttcaccttgaacaaatcgcaaatcct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 actcttagtgggtgacaaagaaaaacagagctggttcaccttgaacaaatcgcaaatcct 277
Query: 605 gggcaatcatgttccggagaacagtatccagcaggagcaatctcttcagagctggccatg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gggcaatcatgttccggagaacagtatccagcaggagcaatctcttcagagctggccatg 217
Query: 665 gggacaggtctg 676
||||||||||||
Sbjct: 216 gggacaggtctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_k02.g1 MSMg01no315_k02.g1 CHROMAT_FILE:
MSMg01no315_k02.g1 PHD_FILE: MSMg01no315_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:10 2005
(586 letters)
>mm_chr11_9015927_9016911
Length = 985
Score = 1087 bits (562), Expect = 0.0
Identities = 580/586 (98%), Gaps = 1/586 (0%)
Strand = Plus / Plus
Query: 1 agtttaattggatttgaaagggccagtcttttccgggactggagagcagggaatttcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttaattggatttgaaagggccagtcttttccgggactggagagcagggaatttcttg 260
Query: 61 tctcatgacgttggtaaaaagttcctctgggcttgagctctgagcctctctgaactgggg 120
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcttga-gttggtaaaaagttcctctgggcttgagctctgagcctctctgaactgggg 319
Query: 121 gagggggcaggtgtgacctctgagtaataaggtcatcttacttccagcggtggacagcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagggggcaggtgtgacctctgagtaataaggtcatcttacttccagcggtggacagcct 379
Query: 181 aggttacctggagtgacacactcccacgaactgtacgtgccattctgcacgtgaagcaac 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggttacctggagtgacgcactcccacgaactgtacgtgccattctgcacgtgaagcaac 439
Query: 241 gggagcttttcctttcacttcccagttgcccgctgtggcccctccgaatgtggcagctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gggagcttttcctttcacttcccagttgcccgctgtggcccctccgaatgtggcagctgg 499
Query: 301 ctgtttgaaaataacctttcttcagtgtctgcccccaaagaggcccatcccaaaaaggag 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 ctgtttgaaaataacctttcttcagtgtctgcccccaaagaggggtatcccaaaaaggag 559
Query: 361 ctcgtggggaggggagctctagaaagctgcatggatactggtatcatcagagtttctagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctcgtggggaggggagctctagaaagctgcatggatactggtatcatcagagtttctagt 619
Query: 421 tcactttatgctgctttagtgataaacacggagaccgaagtttgtaaaaaaattatatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcactttatgctgctttagtgataaacacggagaccgaagtttgtaaaaaaattatatat 679
Query: 481 ataataataataaaaattaaaaaaaataagggaaatgtttttgtatacatttgaagcaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ataataataataaaaattaaaaaaaataagggaaatgtttttgtatacatttgaagcaga 739
Query: 541 gctttttttttcttccagtttggcttcagaccctgacctctaggtt 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gctttttttttcttccagtttggcttcagaccctgacctctaggtt 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
