BAC Information

Click to search

BAC

Clone NameMSMg01-316J03
Chromosome11 (Build37)
Map Location 24,035,927 - 24,196,462
singlet/doubletdoublet
Overlap geneBcl11a
Upstream geneXpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256
Downstream geneLOC100042282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316J03.T7 (MSMg01no316_j03.b1)MSMg01-316J03.TJ (MSMg01no316_j03.g1)
ACCAG436882AG436883
length737776
length of high quality
(start - end)
345 (70 - 414)248 (75 - 322)
definitionCHROMAT_FILE: MSMg01no316_j03.b1 PHD_FILE: MSMg01no316_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:21 2005CHROMAT_FILE: MSMg01no316_j03.g1 PHD_FILE: MSMg01no316_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,196,118 - 24,196,462)(24,035,927 - 24,036,170)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATCAAATTGCCCGTGTCTAGAATGGGGCAGGGAAGACTTGTAGAG
AAGCTCCGGGAAGGCAGGCGGACCGAGGAACCCAGGTGTTCTCTAATCGC
GCAGAAGATTCAACAGTGAGACAGCAATTGTTTCAGCTCACAGACCCACT
GCCAGTGTCCCAGCTATTGTTGCTAAAGTGAAGCCGTTTGTAATTGGAAT
AGGGGCCTTGCTATTTATCTTTCCCGTCAATTAAACTGTGGGTATGATAT
GAAGGTTTTCTAGGGTAAAAGTGTAGTCGAAGCATAAGGAATTTTTGCAG
TTTTAAAATGTAGAATTCCAGGAGAAATTGTTGCTGTGAGGGAGGGAACC
AAAAAGCAACTAAGAGCCCCCCAGAGGAGAAGGAGGGGCAATATCCTCCT
GACAAGCCCCATCCCAGTGAGTTATGCTTCCCACCCAATCGTAAGAGGAT
TAGAAATGGGCAGATAAGGTACAGCAAGATAAACGGACCGCCGGAGAATG
GGAGAGGCCAAGGGAGAAGAATGGAAAATGAAGTCAAGGAAAAATGTCAG
CCAAGGGTCTGGCTTGAGACTCGGACTATATGTTTGATATCACTCTGCTG
TGTATGAAATGGAAATATAAAAGATGGATTATAGGTACACATGTCTCCCT
TGTTCTCTGGCAAAGAAGATTCCAGACTAAACTATGT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGGCAAGCTGATATACATAGTGAT
TCCAGACTAGCTAGGGCTACACACCAAGACCCTGTCTCTATAAAAAAAAC
AAAAGAAAACCATTCTTTCTGGTGTTGTACCCAGGACATGGTCATGTAGA
AGCTGAACTCTTTGTTGATGCAGATGTGCATGGTTGAATCACAGCTGCAG
AGATGTACCACCTTGAATGAAGTTGGGCTTCACATAAAGAAGATGGTAGT
GTGGGGGTGGAGTGGGGTTGAATTTTTTTTCCCTTTCCTTTCCTCCCTCC
TTTCCCATATTCTTTCTACCTCCTCCCCATATCTATTTTTTTATCCACTA
ACGAGGAATTTGTCCCCCCCCCCCCGGTAAATAAAACCCACCCATTTATC
CCCCTCTCTTTCCCATTATACCCCTCCTCCCTCCCTACTTCTCTTCTTTT
CCCTTACTACCCCCTTTACTCCTACTTTCCAAATCTTCTCCCGTTTTTGT
TCCCCCTTTTCTTTCTTTTATCCCCCCTCTTTTTCCATTCTTCCCACCCA
TATTTCTTTCCCATTCCCCCCCCGTATCCCCTAACCTTTTATATTTAATC
TCTACCACCCCACTATATTTATTTATTGCAACTTATAATATACAAACCAC
CTACCCATATTTCTTTTCCTAAACTATAACTTCATCTCCACAATCATATA
TATATCTCATATATCCCTATGCGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_j03.b1 MSMg01no316_j03.b1 CHROMAT_FILE:
MSMg01no316_j03.b1 PHD_FILE: MSMg01no316_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:21 2005
         (345 letters)



>mm_chr11_24195918_24196662
          Length = 745

 Score =  652 bits (337), Expect = 0.0
 Identities = 343/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtctagaatggggcagggaagacttgtagagaagctccgggaaggcaggcggaccgagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 545 gtctagaatggggcagggaagacttgtagagaagctccgggaaggcaggtggaccgagga 486

                                                                       
Query: 61  acccaggtgttctctaatcgcgcagaagattcaacagtgagacagcaattgtttcagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 acccaggtgttctctaatcgcgcagaagattcaacagtgagacagcaattgtttcagctc 426

                                                                       
Query: 121 acagacccactgccagtgtcccagctattgttgctaaagtgaagccgtttgtaattggaa 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 425 acagacccactgccagtgtcccagctattgttgctaaagtgaagccctttgtaattggaa 366

                                                                       
Query: 181 taggggccttgctatttatctttcccgtcaattaaactgtgggtatgatatgaaggtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 taggggccttgctatttatctttcccgtcaattaaactgtgggtatgatatgaaggtttt 306

                                                                       
Query: 241 ctagggtaaaagtgtagtcgaagcataaggaatttttgcagttttaaaatgtagaattcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctagggtaaaagtgtagtcgaagcataaggaatttttgcagttttaaaatgtagaattcc 246

                                                        
Query: 301 aggagaaattgttgctgtgagggagggaaccaaaaagcaactaag 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aggagaaattgttgctgtgagggagggaaccaaaaagcaactaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no316_j03.g1 MSMg01no316_j03.g1 CHROMAT_FILE:
MSMg01no316_j03.g1 PHD_FILE: MSMg01no316_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:21 2005
         (248 letters)



>mm_chr11_24035727_24036374
          Length = 648

 Score =  426 bits (220), Expect = e-124
 Identities = 238/244 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagggcaagctgatatacatagtgattccagactagctagggctacacaccaagaccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aagggcaagctgatatacatagtgattccagactagctagggctacacagcaagaccctg 260

                                                                       
Query: 61  tctctataaaaaaaacaaaagaaaaccattctttctggtgttgtacccaggacatggtca 120
           ||||||||||| | ||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 261 tctctataaaacatacaaaagaaaaccattctttctggtgttgtacccagggcatgctca 320

                                                                       
Query: 121 tgtagaagctgaactctttgttgatgcagatgtgcatggttgaatcacagctgcagagat 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagaagctgaattctttgttgatgcagatgtgcatggttgaatcacagctgcagagat 380

                                                                       
Query: 181 gtaccaccttgaatgaagttgggcttcacataaagaagatggtagtgtgggggtggagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaccaccttgaatgaagttgggcttcacataaagaagatggtagtgtgggggtggagtg 440

               
Query: 241 gggt 244
           ||||
Sbjct: 441 gggt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)