BAC Information

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BAC

Clone NameMSMg01-316N10
Chromosome11 (Build37)
Map Location 3,081,535 - 3,081,916
singlet/doubletsinglet
Overlap geneSfi1
Upstream geneLOC236604, LOC623257
Downstream geneEif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316N10.T7 (MSMg01no316_n10.b1)MSMg01-316N10.TJ (MSMg01no316_n10.g1)
ACCAG437077AG437078
length745751
length of high quality
(start - end)
644 (44 - 687)292 (128 - 419)
definitionCHROMAT_FILE: MSMg01no316_n10.b1 PHD_FILE: MSMg01no316_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:42 2005CHROMAT_FILE: MSMg01no316_n10.g1 PHD_FILE: MSMg01no316_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCATGATAACTCTCACTATTTTATTCCCACTGTTCTCTCTCTGGGC
TCAGCTCCTGCTGTGCTTTCCTAGTCTCTATTGCCCGGATTCTTCTTTGT
CTCACAGACAGCCCTAGGCAGCCACATGCAGTGTGCTGGCTGCAGTGTGC
TGGATGCAGTGTGCTGGCTGCAGTGTGCTGGCTGCAGTGTGCTGGATGCA
GTGTGCTGGATGCAGTGTGCTGGATGCAGTGTGCTGGATGCAGTGTGCTG
GATGCAGTGTGCTGGATGCAGTGTGCTGGCAGTGTGCAGTCTACTTTCTC
TCCCTGCTCTGGGCTTTCCAGATGCTTCTGGCTGCTCTCTCTCTCCTCTA
CAATAAAACCTTCCCACACCATGGAGTGGGCGTGTTGGCAGTTTATACAG
ATATCCCATGATGATGGACTGTAACCTGGAAGCCAAAAAACCCCTTTCCA
AACCAAGTTAGTTTTGGTCAGTGTCCCATCACACGACAGAGCCTAGGCTA
GGACAGTATCTCTGAAGGAAGGCTTGAAGGCTTCTTCCTTTAGTCGACCT
CTTTTCTTTAGAGGAGAGAAGTCCAAGTCTGGTCACAGGCAGGAGAGTGC
ACTGTGGGTTTTACTTTCTAATATGTCTACTCTGATTTTGCGGGTCTGGA
AAGCTTTGATGTGTTGTTCCAAACCCCGTGCTCCTCTGGCTCACN
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGAGAATTGCACACTGTAGGACCTGGAA
TATGGCGAGAACGCTTAATATCACCGAAAATGAGAAATACACACTTTAGG
ACTTGAAATATGGCGAGGAAAACTGAAAAAGGTTGAAAATTTAGAAGAGT
CCACGGTAGGACATGGAATATGGCAAGAAAACTGAAAATCACGGAAAATG
AGAAACATCCACTTGACGAATTGAAAAATGACGAAATCACTGAAAAACGT
GAAAAATGAGAAATGCACACTGTAGGACCTGGAATATGGCGAGAAAACTG
AAAATCACGGAAAATGATAAATATACAATTTAGGACATGAAATATGGCGA
GGAAAACAGAAAAAAGCCCCAAAATTTAGAAATGTCCACTGTAGGACATG
GAATCTGGCAAGAAAACTGAAAATCATGGAAAATGAGAAACATCCACTTG
ACGACTTGAAAAATGACGAAATCACTGAAAAACATGGAAAATGAAAAATG
CACACTGTAGGACCTGGAATATGGCGAGAAAACTGAAAGTCACGGAAAAT
GAGAAAATACAATTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGG
TGGAAAATTTATAAGCGTCCACTGTATGACATGGAATATGGTAAGAAAAC
TGAAAATCTTGGACAATGAGAAACATCCATTTGACCACTTGGAAAATGAC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_n10.b1 MSMg01no316_n10.b1 CHROMAT_FILE:
MSMg01no316_n10.b1 PHD_FILE: MSMg01no316_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:42 2005
         (644 letters)



>mm_chr11_3081291_3082336
          Length = 1046

 Score =  572 bits (296), Expect = e-167
 Identities = 356/384 (92%), Gaps = 17/384 (4%)
 Strand = Plus / Minus

                                                                       
Query: 276 cagtgtgctggc-agtgtgcagtctactttctctccctgctctgggctttccagatgctt 334
           |||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 626 cagtgtgctggcta-tgtgcagtctactttctctccctgctctggactttccagatgctt 568

                                                                       
Query: 335 ctggctgctctctctctcc--tctacaataaaaccttcccacaccatggagtgggcgtgt 392
           ||||||| |||| ||||||  ||||||||||||| ||||||||||||||||||| || ||
Sbjct: 567 ctggctgttctccctctcctatctacaataaaactttcccacaccatggagtggtcgcgt 508

                                                                       
Query: 393 tggcagtttatacagatatcccatgatgatggactgtaacctggaagccaaaaaacccct 452
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 507 tggcagtttatacagatatcccatgatgatggactgtaacctagaagccaaaaaacccct 448

                                                                       
Query: 453 ttccaaaccaagttagttttggtcagtgtcccatcacacgacagagcctaggctaggaca 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttccaaaccaagttagttttggtcagtgtcccatcacacgacagagcctaggctaggaca 388

                                                                       
Query: 513 gtatctct------------gaaggaaggcttgaaggcttcttcctttagtcgacctctt 560
           ||||||||            |||||||||||||||||| |||||| ||||||||||||||
Sbjct: 387 gtatctctgaaggaaggaaggaaggaaggcttgaaggcctcttcc-ttagtcgacctctt 329

                                                                       
Query: 561 ttctttagaggagagaagtccaagtctggtcacaggcaggagagtgcactgtgggtttta 620
           | || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 328 tcctatagaggagagaagtccaagtctggccacaggcaggagagtgcactgtgggtttta 269

                                   
Query: 621 ctttctaatatgtctactctgatt 644
           ||||||||||||||||||||||||
Sbjct: 268 ctttctaatatgtctactctgatt 245


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1046
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1036
Effective search space:   656824
Effective search space used:   656824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)