BAC Information

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BAC

Clone NameMSMg01-316P06
Chromosome11 (Build37)
Map Location 3,081,589 - 3,081,916
singlet/doubletsinglet
Overlap geneSfi1
Upstream geneLOC236604, LOC623257
Downstream geneEif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316P06.T7 (MSMg01no316_p06.b1)MSMg01-316P06.TJ (MSMg01no316_p06.g1)
ACCAG437158AG437159
length733736
length of high quality
(start - end)
591 (47 - 637)344 (74 - 417)
definitionCHROMAT_FILE: MSMg01no316_p06.b1 PHD_FILE: MSMg01no316_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:51 2005CHROMAT_FILE: MSMg01no316_p06.g1 PHD_FILE: MSMg01no316_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATCATGTATACCCCTCACTATTTTATTCCCACTGTTCTCTCTCT
GGGCTCAGCTCCTGCTGTGCTTTCTTAGTCTCTATTGCCCGGATTCTTCT
TTGTCTCACAGACAGCCCTAGGCAGCCACATGCAGTGTGCTGGCTGCAGT
GTGCTGGATGCAGTGTGCTGGCTGCAGTGTGCTGGCTGCAGTGTGCTGGA
TGCAGTGTGCTGGATGCAGTGTGCTGGATGCAGTGTGCTGGATGCAGTGT
GCTGGATGCAGTGTGCTGGATGCAGTGTGCTGGCAGTGTGCAGTCTACTT
TCTCTCCCTGCTCTGGGCTTTCCAGATGCTTCTGGCTGCTCTCTCTCTCC
TCTACAATAAAACCTTCCCACACCATGGAGTGGGCGTGTTGGCAGTTTAT
ACAGATATCCCATGATGATGGACTGTAACCTGGAAGCCAAAAAACCCCTT
TCCAAACCAAGTTAGTTTTGGTCAGTGTCCCATCACACGACAGAGCCTAG
GCTAGGACAGTATCTCTGAAGGAAGGCTTGAAGGCTTCTTCCTTTAGTCG
ACCTCTTTTCTTTAGAGGAGAGAAGTCCAAGTCTGGCCACAGGCAGGAGA
GTGCACTGCGGGTTTTACTTTCTAATATGTCTACTCTGATTTTGGGGGTC
TGGAAAGCTTTGATGTGTGTTCCAAAACCCCGG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCCCGAAATGAGAATTGCACACTGTAGGACCTGGA
ATATGGCGAGAACGCTTAAAATCACCGAAAATGAGAAATACACACTTTAG
GACTTGAAATATGGCGAGGAAAACTGAAAAAGGTTGAAAATTTAGAAGAG
TCCACGGTAGGACATGGAATATGGCAAGAAAACTGAAAATCACGGAAAAT
GAGAAACATCCACTTGACGAATTGAAAAATGACGAAATCACTGAAAAACG
TGAAAAATGAGAAATGCACACTGTATGACCTGGAATATGGCGAGAAAACT
GAAAATCACGGAAAATGAGAAATATACAATTTAGGACATGAAATATGGCG
AGGAAAACAGAAAAAAGGTGCCAAATTTAGAAATGTCCACTGTAGGACAT
GGAATCTGGCAAGAAAACTGAAAATCATGGAAAATGAGAAACATCCACTT
GACGACTTGAAAAATGACGAAATCACTGAAAAACATGGAAAATGAAAAAT
GCACACTGTAGGACCTGGAATATGGCGAGAAAACTGAAAGTCACGGAAAA
TGAGAAATATACAATTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAA
GGTGGAAAATTTATAAGCGTCCACTGTAGGACATGGAATATGGTAAGAAA
ACTGTAAATCATGGAAAATGACAAACACCCACCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_p06.b1 MSMg01no316_p06.b1 CHROMAT_FILE:
MSMg01no316_p06.b1 PHD_FILE: MSMg01no316_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:51 2005
         (591 letters)



>mm_chr11_3081290_3082282
          Length = 993

 Score =  476 bits (246), Expect = e-138
 Identities = 303/330 (91%), Gaps = 17/330 (5%)
 Strand = Plus / Minus

                                                                       
Query: 277 cagtgtgctggc-agtgtgcagtctactttctctccctgctctgggctttccagatgctt 335
           |||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 627 cagtgtgctggcta-tgtgcagtctactttctctccctgctctggactttccagatgctt 569

                                                                       
Query: 336 ctggctgctctctctctcc--tctacaataaaaccttcccacaccatggagtgggcgtgt 393
           ||||||| |||| ||||||  ||||||||||||| ||||||||||||||||||| || ||
Sbjct: 568 ctggctgttctccctctcctatctacaataaaactttcccacaccatggagtggtcgcgt 509

                                                                       
Query: 394 tggcagtttatacagatatcccatgatgatggactgtaacctggaagccaaaaaacccct 453
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 508 tggcagtttatacagatatcccatgatgatggactgtaacctagaagccaaaaaacccct 449

                                                                       
Query: 454 ttccaaaccaagttagttttggtcagtgtcccatcacacgacagagcctaggctaggaca 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttccaaaccaagttagttttggtcagtgtcccatcacacgacagagcctaggctaggaca 389

                                                                       
Query: 514 gtatctct------------gaaggaaggcttgaaggcttcttcctttagtcgacctctt 561
           ||||||||            |||||||||||||||||| |||||| ||||||||||||||
Sbjct: 388 gtatctctgaaggaaggaaggaaggaaggcttgaaggcctcttcc-ttagtcgacctctt 330

                                         
Query: 562 ttctttagaggagagaagtccaagtctggc 591
           | || |||||||||||||||||||||||||
Sbjct: 329 tcctatagaggagagaagtccaagtctggc 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 993
Length adjustment: 10
Effective length of query: 581
Effective length of database: 983
Effective search space:   571123
Effective search space used:   571123
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)