Query= MSMg01no316_p24.b1 MSMg01no316_p24.b1 CHROMAT_FILE:
MSMg01no316_p24.b1 PHD_FILE: MSMg01no316_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:55 2005
(679 letters)
>mm_chr11_34046005_34047083
Length = 1079
Score = 1118 bits (578), Expect = 0.0
Identities = 650/676 (96%), Gaps = 4/676 (0%)
Strand = Plus / Plus
Query: 4 gaattccttgcacctgctcctctaggcaccatctctgtagtttcagtaatttccatcaga 63
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccttgcaccagtttctctaggcaccatctctgtagtttcagtaatttccatcaga 263
Query: 64 accccttgagcacacactgaaccccttgagcacacgctgtcttctaagcccactagtcca 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accccttgagcacaaactgaaccccttgagcacacgctgtcttctaagcccactagtcca 323
Query: 124 ggctgcctgcactctaacctcagattaatgttacttccttgtgaagattttctcaatctg 183
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 324 ggctgcctgcgctataacctcagattaatgttgcttccttgtgaagattttctcaatctg 383
Query: 184 tttgactggaccaactctttggtagctacacacatcctaatgtccttcatagctcttatt 243
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 tttgactggactaactctttggtagcttcacacatcctaatgtccttcatagctcttatt 443
Query: 244 caagccattattattttgcatttatttattcaatagttgtaacgatgttcatattaacct 303
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 444 caagccattattgttttgcatttatttattcaatagttgtaatgatgttcatattaaaat 503
Query: 304 tttttcttttttgagacagggtttctctgtgtagccctggctgtcctggaactcactctg 363
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttt----tttgagacagggtttctctgtgtagccctggctgtcctggaactcactctg 559
Query: 364 tagaccagactggcctcaaactcagaaatccgtctgcctctacttcccgagtgctgggat 423
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 tagaccaggctggcctcaaactcagaaatccgtctgcctctacttcctgagtgctgggat 619
Query: 424 taaaggcatgcgccaccattaataatgaaatttattgtagcatgatttatgtataagaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taaaggcatgcgccaccattaataatgaaatttattgtagcatgatttatgtataagaaa 679
Query: 484 agtcccggttttgaagagtcctagcaaatctttacaaagcttatacacttgtgtaaccac 543
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agtccctgttttgatgagtcctagcaaatctttacaaagcttatacacttgtgtaaccac 739
Query: 544 caccatatccaaatatggaacattccatctcttcaatagttcagcaccctatcccagtca 603
||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 740 caccatatccaaacagggaacattccatctcttcaatagttcagcaccccatcccagtca 799
Query: 604 ttcatgaggtgcacatgagcgaccaacctttagattgccgagaaccattgttctcattgg 663
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 800 ttcatgaggtgcacatgagcgaccaacccttagattgccaagaaccattgttctcattgg 859
Query: 664 ctgctgggagttgccc 679
||||||||||||||||
Sbjct: 860 ctgctgggagttgccc 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_p24.g1 MSMg01no316_p24.g1 CHROMAT_FILE:
MSMg01no316_p24.g1 PHD_FILE: MSMg01no316_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:55 2005
(291 letters)
>mm_chr11_34212622_34213312
Length = 691
Score = 540 bits (279), Expect = e-158
Identities = 288/291 (98%)
Strand = Plus / Minus
Query: 1 ctctgggagtggatatgggcacagataagactatggggattcatgcagacaaaattattt 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctctgggagtggataagggcacagataagactatggggattcatgcagacaaaattattt 328
Query: 61 accagaaaaatgaaactgactgcccctgagaatcttggctaacataggctgagtctccca 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 accaggaaaatgaaactgactgcccctgagaatcttggctaacataggctgagtctccca 268
Query: 121 acatccatagagtgctgtttccgaggtacaaacagcacagaggtggggtgaagaggggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acatccatagagtgctgtttccgaggtacaaacagcacagaggtggggtgaagaggggga 208
Query: 181 caagggggttctgctcttagttttgtatctggagctcctagcacagctacaggcacgtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 caagggggttctgctcttagttttgtatctggagctcctagcacagctacaggcacgtaa 148
Query: 241 tgggtgttttatgaatgttttaaaatgaattagcggtaaggacatttcctc 291
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tgggtgtttaatgaatgttttaaaatgaattagcggtaaggacatttcctc 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
