CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATTCCAGGCTGTCCGCGCCAGCCACCAGGTGGGATCCTGTCTGTAAAA
CAAAACAAAACAAAACAAAACAAAACAAAGCTGGGCATAGTGACACATGT
CTTTAATCTCAGCACTCAGGAGGCAGAGGCAGGCAGATCTCAGAGTTCCA
GGCCAGCCTGGTCTACCAAGTGAGTTCCAGGACAGCCAGGGCTACACAGA
GAAACCCTGTCTTAAAACAACAACAACAACAACAACAACCCAAAAGACCA
AAAACTAAAAACCAAACAAACAAAACAAAAACCATGAAACAACAACAAAA
GGAATTTGACCCCCACATTATGTCCCAACAATTCATAGGGAAGTATCATA
TACCCAATAATGAAATTTTCCCGCAATAACTCATGTCTTCTTCAAGAAGC
ATTGTCGGCCCATGTAGAGTAGTACTCTCTTCGAATTGCCATCGTTGTTC
ACCATAACCATTTGATAAGACTTTATTGCTGGGCTGGAGAGATGGCTCAG
CAGTTAAGAACACTGACTCAGAGATCCTGAGTGCAATTCCCAGCAACCAC
GTGATGGCTCACAACCATCTGTCATGGGATCTGATGTCCTCTTCTGGTGT
GTCTGAAGACAGCGACAGTGGACTCATATATATATATATATATATATATA
TATATATATATATATAATAAATAATTTAG

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAAATATGGGNGTG
AACTATAGAAGTTTCCCCGAAATTCACTCATCACCAAAACTATGCCGTGT
CCATTGTGGGTTTGGAGACATTTCGGAAAAATCTCAACACAGCCAAAGCT
TTTGAGTGGTCAGACTGTCAATCTTTCTGTCCCCTAAACTGGGGTAGTGC
CTCTCTGATAGCATGGATGGGCGGAGCATTTGTAGTGAACAATGTAACAA
TGTCAAAGTCCCTTTTTAAAATTGTGTACTTACATGGACTGTGTTTATTA
TGAATTGTGAATATGATTTTTAGAAGGCACTTCATAAGACTTCAGACCAC
AAACCCTGCTGTTTCCCAACACTCCAAACAAACTGATTTTTGAATCATCT
GGGTTCCCATGTGTTAAACACCCGCATGTTTTTATGATGGTAATTGTTTT
TTTGCGATTATTCTCAATCACAAAGTACAGGCAACACAGCTAATTGGATT
ATATTTTGGATTTTTACCGCAGAACCACAGATCATCAGAGCTAGAAAGGC
CTTTCTTTACCCGGCTCCTTCCTTGAATATGGGAGTCCCAAAGGTGCCAG
GCTGTCAGGCCGCCTTCCCACCCCAACCAGTTAATACCTAAAAGGGGCTC
TGGCCATGGTTCAGTGCCCTTTGACTCTGTAGTGTGCTGTTTGTTGTTCC
TCGATAGGCAGAAGTCAGTAGCT

Query= MSMg01no317_a18.g1 MSMg01no317_a18.g1 CHROMAT_FILE:
MSMg01no317_a18.g1 PHD_FILE: MSMg01no317_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:58 2005
         (644 letters)



>mm_chr11_88580886_88581928
          Length = 1043

 Score = 1191 bits (616), Expect = 0.0
 Identities = 637/644 (98%), Gaps = 1/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcactcatcaccaaaactatgccgtgtccattgtgggtttggagacatttcggaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ttcactcatcaccaaaactatgccgtgtccattgtgggtttggagacattt-ggaaaaat 259

                                                                       
Query: 61  ctcaacacagccaaagcttttgagtggtcagactgtcaatctttctgtcccctaaactgg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 260 ctcaacacagccaaagcttttgagtggtcagactgtcaatctctctgtcccctaaactgg 319

                                                                       
Query: 121 ggtagtgcctctctgatagcatggatgggcggagcatttgtagtgaacaatgtaacaatg 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggtagtgcctctctgacagcatggatgggcggagcatttgtagtgaacaatgtaacaatg 379

                                                                       
Query: 181 tcaaagtccctttttaaaattgtgtacttacatggactgtgtttattatgaattgtgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 tcaaagtccctttttaaaattgtgtacttacatggactgtgtttattataaattgtgaat 439

                                                                       
Query: 241 atgatttttagaaggcacttcataagacttcagaccacaaaccctgctgtttcccaacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgatttttagaaggcacttcataagacttcagaccacaaaccctgctgtttcccaacac 499

                                                                       
Query: 301 tccaaacaaactgatttttgaatcatctgggttcccatgtgttaaacacccgcatgtttt 360
           |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 500 tccaaacaaactgatttttgaatcatctgggttcccatgtgttaaagagctgcatgtttt 559

                                                                       
Query: 361 tatgatggtaattgtttttttgcgattattctcaatcacaaagtacaggcaacacagcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatgatggtaattgtttttttgcgattattctcaatcacaaagtacaggcaacacagcta 619

                                                                       
Query: 421 attggattatattttggatttttaccgcagaaccacagatcatcagagctagaaaggcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attggattatattttggatttttaccgcagaaccacagatcatcagagctagaaaggcct 679

                                                                       
Query: 481 ttctttacccggctccttccttgaatatgggagtcccaaaggtgccaggctgtcaggccg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttctttacccggctccttccttgaatatgggagtcccaaaggtgccaggctgtcaggccg 739

                                                                       
Query: 541 ccttcccaccccaaccagttaatacctaaaaggggctctggccatggttcagtgcccttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccttcccaccccaaccagttaatacctaaaaggggctctggccatggttcagtgcccttt 799

                                                       
Query: 601 gactctgtagtgtgctgtttgttgttcctcgataggcagaagtc 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gactctgtagtgtgctgtttgttgttcctcgataggcagaagtc 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1043
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1033
Effective search space:   654922
Effective search space used:   654922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)