Query= MSMg01no317_e01.b1 MSMg01no317_e01.b1 CHROMAT_FILE:
MSMg01no317_e01.b1 PHD_FILE: MSMg01no317_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:14 2005
(292 letters)
>mm_chr11_37212928_37213615
Length = 688
Score = 487 bits (252), Expect = e-142
Identities = 279/290 (96%), Gaps = 4/290 (1%)
Strand = Plus / Plus
Query: 1 gtttttgtgggtcaaactcagatccacaggtggacaaggcaaacacattaccaaatgagc 60
|||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct: 201 gtttttgtgggtcaaactcagatccacaggtggacaaggcaa----atgagcaaatgagc 256
Query: 61 tatctctcaagaccacacataaaaccttttattgagatagttatcttgaattacatggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 257 tatctctcaagaccacacataaaaccttttattgagatagttatcttgaattacatgaag 316
Query: 121 atgaatcaataaatttctgcatatattagtcagttttctcattgctgtgttcaaaatcct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 317 atgaatcaataaatttctgcatatattagtcagttttctcattgctgtgttcgaaatcct 376
Query: 181 ggaaagagctggtttcaatagggaaaggtttatttaggatcacatttcaaattcaaattc 240
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 377 ggaaagaggtggtttcaatagggaaaggtttatttaggctcacatttcaaattcaaattc 436
Query: 241 aaattcaattttgactcacattcacaaattcatcatttagggcaggtcat 290
||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaatttaattttgactcacattcacaaattcatcatttagggcaggtcat 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 688
Length adjustment: 9
Effective length of query: 283
Effective length of database: 679
Effective search space: 192157
Effective search space used: 192157
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no317_e01.g1 MSMg01no317_e01.g1 CHROMAT_FILE:
MSMg01no317_e01.g1 PHD_FILE: MSMg01no317_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:14 2005
(642 letters)
>mm_chr11_37365268_37366311
Length = 1044
Score = 1218 bits (630), Expect = 0.0
Identities = 640/644 (99%), Gaps = 3/644 (0%)
Strand = Plus / Minus
Query: 1 tggctctcacatggatccaatgaaacagtagaagttggataccagcatcaaaaagaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tggctctcacatggatccaatgaaacagtagaagttggataccagcatcaaaaagaccac 679
Query: 61 agactgcagcatctcagctgggaactccttccccaaatctagtttggaacgatccagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agactgcagcatctcagctgggaactccttccccaaatctagtttggaacgatccagttt 619
Query: 121 ggttggattaaaaacctgtgcacaccacttgctgttacagaccagcatgccttttctggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggttggattaaaaacctgtgcacaccacttgctgttacagaccagcatgccttttctggt 559
Query: 181 cgatctgcattaagctttcccttagtgtgctaaccttagttaaggaaatggtgtcctttc 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 558 cgatctgcattaagctttcccttagcgtgctaaccttagttaaggaaatggtgtcctttc 499
Query: 241 agaggaaacagctaagtcccaaagctgctttgaaatccaaactattcaagatgaagcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agaggaaacagctaagtcccaaagctgctttgaaatccaaactattcaagatgaagcttc 439
Query: 301 ctgttctcgttatgtgcaaagaaaataaaagtcaacaaaaggacagaacaaatgaagact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctgttctcgttatgtgcaaagaaaataaaagtcaacaaaaggacagaacaaatgaagact 379
Query: 361 ttaaggacatcagtaga--tttttttttctcagaaaattatttttgcaatacaactccaa 418
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttaaggacatcagtagatttttttttttctcagaaaattatttttgcaatacaactccaa 319
Query: 419 aatttcccatttcaggcttttaacaatgtttcctacactattttccttcctttttttaac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aatttcccatttcaggcttttaacaatgtttcctacactattttccttcctttttttaac 259
Query: 479 atttaatttatttcttactgcaataatgatcatcttgcttcagcctcctaaatcttggta 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atttaatttatttcttactgcaataatgatcatcttgcttcagcctcctaaatcttggta 199
Query: 539 tagttactgttgttattgttattatttttattattgatatatttttttcattcttagtat 598
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 198 tagttactgttgttattgttattatttttattattgatata-ttttttcattcttagtat 140
Query: 599 ttcacctataatcttaaggacaagataacttctactataagggc 642
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ttcacctataatcttaaggacaagataacttctactataagggc 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1044
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1034
Effective search space: 653488
Effective search space used: 653488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
