BAC Information

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BAC

Clone NameMSMg01-317E23
Chromosome11 (Build37)
Map Location 106,929,798 - 106,930,477
singlet/doubletsinglet
Overlap geneBptf
Upstream geneCcdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik
Downstream geneLOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317E23.T7 (MSMg01no317_e23.b1)MSMg01-317E23.TJ (MSMg01no317_e23.g1)
ACCAG437416AG437417
length742717
length of high quality
(start - end)
694 (45 - 738)223 (428 - 650)
definitionCHROMAT_FILE: MSMg01no317_e23.b1 PHD_FILE: MSMg01no317_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:18 2005CHROMAT_FILE: MSMg01no317_e23.g1 PHD_FILE: MSMg01no317_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTTGATGACAAATATTCATTGAAATTGAGTAAATTAATTTCAGA
TGCATTTTTAGTGTTATTTTACCAAAGAAAAGTATGTTCAGCAACTTTGC
AGTCTGCAAAGGAGGAGCACGAGTCCCGGTTCCCTTCTCATCCGAGGAGC
GGATGCAGGACCGTATATTTCTGGTAATGGATTTCTTCTAACCTTCCCCA
GCACTGGTACATTCATAGTGTTTGTGGTGCTCATGAGCAGTGGTTCATGT
TTGGAAAAGCCAGCTTGAACTTCAGAATTCTGTTCAATTGGAAAAGGTCT
TTCAGAGTGTTTTAGTTTGTTTTACTCTTTGAGAAAATATAAACATTTTC
AGATTTTTGTTTTGTTTTACCAAAAATTAATTCATCATGATTTTTTCAAT
ACTCCTATCAAATTTAGTAACACAGTTACTGATTTTGTTTTTCTCTGTAT
TTTTCATGCAGATACATTATAGACTAATATAAAGATCTTTATAAGTTGTT
GTCATATCAAGTCTTAAGATAAAATACTTTAGATATTATTTCTGTGGCAT
TGGAAATGAGACTCACTGATTTAAAGTTGTTCAGTGTACATTATCCTGGG
AGCCCAAATGTGTTACTTTAAAGACTGTAATGCCAGAGTCTTACAAACCA
TCTGACAAGCACTAAGGTTGTAGTCAGTGCCAGAAACATCTC
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGTTACCTGGAGGTNG
AACTATAGAAGTAACCACAACATTCGTAGCATTAAAAGCCACTCTACAGA
AGGAAATTAAAGATTATTGAGCCCCCACACTTCACCATCACACACTGCCT
CTCATCATCTATTAGCCACCCCTATCACTCCAGGATTATTCTAAGCCTCC
CTTTTAAAAAATGGGGAAAAGACAGAGCTTTTAATCTCCAGAAGCTTCAA
CTGTTGACACATTAATCGAAAATGTCCCCATTAGCTCTGATGTCTGAAAC
TAGACTAGCCACACATTCCCGTGNATTTCACGCCATATGGTTAAGAACTG
TGCACACATATTTTTATTATCACACTCAAATCTGCAGACTTGGCAGCCAG
TGCTTTCTGCCTACTAAAACCATAATTCTCAACCTTTCTAATGTTGCAAC
TCTTTAGAGTACAGGTCTTCATGTTGTGATCTCCAACCATAAAATTATTT
CATTACTACTTCATAACTGCAATTTTGCTACTGTTATGATTAGCAATATA
AGTATCTGATATGTGGCCCCTATGATAGGGTTGTTCAACCCCCCAAAGCA
GTTGCAACTTACAAGTTGAGAACTGGTGTGCTAAGGTATCTTTCCAGCCC
TCTCTGTAATTATTAGAATAAAAGGCAGCATTGCTCATGGCAAATTCCCC
TACACTCTGGTTCTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_e23.b1 MSMg01no317_e23.b1 CHROMAT_FILE:
MSMg01no317_e23.b1 PHD_FILE: MSMg01no317_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:18 2005
         (694 letters)



>mm_chr11_106929630_106930724
          Length = 1095

 Score = 1189 bits (615), Expect = 0.0
 Identities = 668/691 (96%), Gaps = 12/691 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatttgatga-caaatattcattgaaattgagtaaattaatttcagatgcattt 63
           ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gaattccatttgaggataaaatattcattgaaattgagtaaattaatttcagatgcattt 789

                                                                       
Query: 64  ttagtgttattttaccaaagaaaagtatgttcagcaactttgcagtctgcaaaggaggag 123
           ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ttagtgttagtttaagaaagaaaagtatgttcagcaactttgcagtctgcaaaggaggag 729

                                                                       
Query: 124 cacgagtcccggttcccttctcatccgaggagcggatgcaggaccgtatatttctggtaa 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cacgagtcctggttcccttctcatccgaggagcggatgcaggaccgtatatttctggtaa 669

                                                                       
Query: 184 tggatttcttctaaccttccccagcactggtacattcatagtgtttgtggtgctcatgag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tggatttcttctaaccttccccagcactggtacattcatagtgtttgtggtgctcatgag 609

                                                                       
Query: 244 cagtggttcatgtttggaaaagccagcttgaacttcagaattctgttcaattggaaaagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cagtggttcatgtttggaaaagccagcttgaacttcagaattctgttcaattggaaaagg 549

                                                                       
Query: 304 tctttcagagtgttttagtttgttttactctttgagaaaatataaacattttcagatttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tctttcagagtgttttagtttgttttactctttgagaaaatataaacattttcagatttt 489

                                                                       
Query: 364 tgttttgttttaccaaaaattaattcatcatgattttttcaatactcctatcaaatttag 423
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgttttgttttagcaaaaattaattcatcatgattttttcaatactcctatcaaatttag 429

                                                                       
Query: 424 taacacagttactgattttgtttttctctgtatttttcatgcagatacattatagactaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 taacacagttactgattttgtttttctctgtatttttcatgcagatacattatagactaa 369

                                                                       
Query: 484 tataaagatctttataagttgttgtcatatcaagtcttaagataaaatactttagatatt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tataaagatctttataagttgttgtcatatcaagtcttaagataaaatactttagatatt 309

                                                                       
Query: 544 atttctgtggcattggaaatgagactcactgatttaaagttgttcagtgtacattatcct 603
           ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||
Sbjct: 308 atttctgtggcattggaaatgagtctcactgatttaaaattgttcagtgcacattatcct 249

                                                                       
Query: 604 gggagcccaaatgtgttactttaaagactgtaatgccagagtcttacaaaccatctgaca 663
           |||||||||||||||||||||||||||||||||||||||||||| ||         | | 
Sbjct: 248 gggagcccaaatgtgttactttaaagactgtaatgccagagtctgac---------g-c- 200

                                          
Query: 664 agcactaaggttgtagtcagtgccagaaaca 694
           |||||||||||||||||||||||||||||||
Sbjct: 199 agcactaaggttgtagtcagtgccagaaaca 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1095
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1085
Effective search space:   742140
Effective search space used:   742140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)