BAC Information

Click to search

BAC

Clone NameMSMg01-317F10
Chromosome11 (Build37)
Map Location 8,495,517 - 8,495,796
singlet/doubletsinglet
Overlap geneTns3
Upstream geneLOC665380
Downstream geneLOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317F10.T7 (MSMg01no317_f10.b1)MSMg01-317F10.TJ (MSMg01no317_f10.g1)
ACCAG437437AG437438
length743740
length of high quality
(start - end)
288 (78 - 365)280 (75 - 354)
definitionCHROMAT_FILE: MSMg01no317_f10.b1 PHD_FILE: MSMg01no317_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:20 2005CHROMAT_FILE: MSMg01no317_f10.g1 PHD_FILE: MSMg01no317_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCG
CGGAATTCCAAGTTTGGCGAATACAGGGATTTTCTGGGATGTTGGAACAC
TGGCGAAAGCTTAGCTATGTCAGAATTCAACCTTTAAAGGCACTTATAAT
AAAATAATACTAAAAGAGAGCACATGCATCCATACACCAGACTAACACAG
GGATAGGGTATGAGTATACAGGTTATGAGAATGCCAAGGTTCCAGGAGGT
TGAGTTTCCTTGAAACTCTTTGCCTCGTGAGTGCTTCCAGGCCTCTCTGC
CTGCCAAGCAGACCTCACTGTTGTGTGTGTAGCAACGTATATCATATTTT
CATCCATTCAACCTATGATGGGTACCCACCCCGACCCATAGCTTGGTTAT
TGCAAATAGTGCTACAATAAACACCACGATGGAGTTATCTCTAGATGCTG
ACAGATTTGAGGGCGGGGGTGGGGGGGCTGTATAAACCCAACTGGATCTT
ATGATAGGTTCATTGTTAATTTTGTGAGCATCCTCCATACTGATTTCCAA
AGTGTCTAAACTAATTTATATTCTTACCAATAGTATATAAGGATCTCTGT
TTTCCAGCATTTGCTGTTTGTTTTCTTGACGGTAGCCTTCCTGTCACTGG
TAAAACAGATTTCAGCTTTGGCTTTGTCTCACATTTATCTACCTGAGACA
GCTACAGGGGCTCAACATTTTTTTCATCTCTGCTCCATCTTTG
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTGAAGTCAATGTTGTATGTGGGC
CCAGCTCAGTAGAAATGTTTGTTAAATTGTCCAGCTTAAAATTCAACTAC
TTCCATTATTAGGATGAATGGTGGGGAGCCAAATGGAAGAATACTGGGAA
ATTGTTGAGCTGGTAGAATGGACTGTCTCTCAGGGAGGTGTCATCAGTTA
GTCCTGAAGCTGCCACCTCCAGTAACAGCAAAGAACAGAAGCCCTTGGCA
TCATGTGACAGGTATTTTTTTTGCCTGCAGGCTCAGCTCTTCAGTGTAAC
CTGTGGTTGNAGTANCTTCCCATTACCTTNTTCCCGAGTATACACCACAA
GCCTGTGTCAGGTGAGCCCCCACAAAAAAACATAAAACTGCCCGAGGGAC
CTATAATTGCCCACCCCACCTTCAGATACAGAACTTCAGAAATCCTAAAC
CTCGGAAGTTATGTTGTACAAGCACAGAGTACCCAAGTGCCCAGGAAACT
GATGAACACGTGTTTAGCACAAGAGCTCAGCTACAGGGGGCTGGGACTTT
GGCTTCTGTTGTTGTTTTAGCGCAAATTTTTAATTGACTTTAGAGCTTCT
GTTTTGTTTTTTTACTACTGAAATTGGCTCACTTTTCCTAGGAATATATC
TAGACCATATGAGAAAAGTGCACAGAGTTATTTCTGGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_f10.g1 MSMg01no317_f10.g1 CHROMAT_FILE:
MSMg01no317_f10.g1 PHD_FILE: MSMg01no317_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:20 2005
         (280 letters)



>mm_chr11_8495317_8495996
          Length = 680

 Score =  466 bits (241), Expect = e-136
 Identities = 269/287 (93%), Gaps = 15/287 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctgaagtcaatgttgtatgtgggcccagctcagtagaaatgtttgttaaattgtccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctgaagtcaatgttgtatgtgggcccagctcagtagaaatgtttgttaaattgtccag 260

                                                                       
Query: 61  cttaaaattcaactacttccattattaggatgaatggtggggagccaaatggaagaatac 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaaaattcgactacttccattattaggatgaatggtggggagccaaatggaagaatac 320

                                                                       
Query: 121 tgggaaattgttgagctggtagaatggactgtctctcagggaggtgtcatcagttagtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggaaattgttgagctggtagaatggactgtctctcagggaggtgtcatcagttagtcc 380

                                                                       
Query: 181 tgaagctgccacctccagtaacagcaaagaacagaagcccttggcatcatgtgacaggta 240
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 381 tgaagctgccacctccagtaacagccaagaacagaagcccttggcatcatatgacaggta 440

                                                          
Query: 241 --------ttttttttgcctgcaggctcagctcttcagtgtaacctg 279
                   |       |||||||||||||||||||||||||||||||
Sbjct: 441 aacagccat-------gcctgcaggctcagctcttcagtgtaacctg 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)