BAC Information

Click to search

BAC

Clone NameMSMg01-319G18
Chromosome11 (Build37)
Map Location 82,045,131 - 82,227,868
singlet/doubletdoublet
Overlap geneTmem132e
Upstream geneAccn1, 1700071K01Rik, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1
Downstream geneCct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319G18.T7 (MSMg01no319_g18.b1)MSMg01-319G18.TJ (MSMg01no319_g18.g1)
ACCAG438950AG438951
length754739
length of high quality
(start - end)
184 (120 - 303)236 (123 - 358)
definitionCHROMAT_FILE: MSMg01no319_g18.b1 PHD_FILE: MSMg01no319_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:45 2005CHROMAT_FILE: MSMg01no319_g18.g1 PHD_FILE: MSMg01no319_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,227,685 - 82,227,868)(82,045,131 - 82,045,365)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCGACCCGCCGGAATTCCTC
TGAGATGCCCNGCACCGCAGAGNTTAACTTTCACAGNAAGCTCTTCCAAA
CACACCTGATTTTATTCTGCTCATGTGCTGATGTGGGAGGGTATGTTGAT
AGGAAATTCAACCACAGGGTTGGAGAGTTGACATTTTCAGCCCCACCCAC
TGGCCCTAGGCATTTGGGGAACTGTAGTCTGGGCGGAATGCAATGTTTCT
GCCAACCCCTTCATGGGGTTGTTATCTGTGTTCTTTCTTAATTCCCCCAA
GAATTGGAAACTTTGATTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTTTTTTTTTCTCTCCCTCTCTCTCTCTNTNTGTGTCTGTGTGTGTGT
TGGTGAGCCCCACTCCTCTCCAAAAAAAAAAAATTTTTTTTGGTGGTAGA
CCTTATAACATACACCCTACCTTATTCTTAATTACCTAAGCCTCCACTCC
TCTCATTTACCCCAATTCTTTCCTTTATATTACCTCTTTCTTTTCCACAT
ATCCTTTCCCATTCCTTTTATATTTAATTTCATATATAATCTCATTCATT
TCTCCCCTCTACCATTAACTCACTACCTTTCCTTTTAAACCCCCACACAC
ACTTTTTTTTTTTTTTTCTTCCCCACATCTCCCCCCTTACCCCTTTTATT
TTCCCCTTTCTCCCCTTCTTGCTATTTCCTATTCCTCCTACCGTTCCTCT
CATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCCCTAAGATATAGAAGCCTCTGCAATTTGT
TCTCCCTCCTTTTATTACCCTTAACCACACCCCTTTCTAGTAATACATTT
CCCAAGCATGCATACTTACCAGGGACTGCCTCTCCTAACCTGTGGGTACT
GGATCAAGTGAAGTAAGCCCCTGTCCCCTAAGCTTAATAGCAAGCCCTGT
CTCTGGGGACAGTGATTACATCGGGTGTAAGTGAACAACTTGAGGTAATG
AAATCAGAGTGAGCTCTGGTCTTCATCTTGCTTTTGTCTGACAGTCTATG
GAGGGCATTCTTATAAGGCTCTACCGCCCTCTTGCTGTCATGTGGGACTC
AAGCTGGAGTCTATCCCCCCACACCCAAATAAAAGACTGCCACCGTCCAG
GATTACACTGGTGAAGCACTTAGATCTAGCTTTACCTGAAGCCAGGGGCT
TTCCTGTTTGTTGAACCAGTTAATCCCACTCTTGATCAATGTAGTGTCCT
GGCTAGAATGACAGCTTTTAATGGCAAGGATCTTAGGAAACAACACACAC
AGGCTGTGAGAGAATGGTGAAAGTAGGAAGTGAACAGGTGCGGCTGCAAG
GATGGATCAGTGGGGAAGCGGTGCTTGCTGCATTAACTTGAAAGCCTGAG
TTCAGATCCCAACTTGCATGTGATAATGCCCAGACCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_g18.b1 MSMg01no319_g18.b1 CHROMAT_FILE:
MSMg01no319_g18.b1 PHD_FILE: MSMg01no319_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:45 2005
         (184 letters)



>mm_chr11_82227485_82228068
          Length = 584

 Score =  333 bits (172), Expect = 5e-96
 Identities = 181/184 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatgtgctgatgtgggagggtatgttgataggaaattcaaccacagggttggagagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcatgtgctgatgtgggagggtatgttgataggaaattcaaccacagggttggagagtt 325

                                                                       
Query: 61  gacattttcagccccacccactggccctaggcatttggggaactgtagtctgggcggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gacattttcagccccacccactggccctaggcatttggggaactgtagtctgggcggaat 265

                                                                       
Query: 121 gcaatgtttctgccaaccccttcatggggttgttatctgtgttctttcttaattccccca 180
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaatggggctgccaaccccttcatggggttgttatctgtgttctttcttaattccccca 205

               
Query: 181 agaa 184
           ||||
Sbjct: 204 agaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no319_g18.g1 MSMg01no319_g18.g1 CHROMAT_FILE:
MSMg01no319_g18.g1 PHD_FILE: MSMg01no319_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:46 2005
         (236 letters)



>mm_chr11_82044931_82045566
          Length = 636

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccacacccctttctagtaatacatttcccaagcatgcatacttaccagggactgcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccacacccctttctagtaatacatttcccaagcatgcatacttaccagggactgcctc 260

                                                                       
Query: 61  tcctaacctgtgggtactggatcaagtgaagtaagcccctgtcccctaagcttaatagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctaacctgtgggtactggatcaagtgaagtaagcccctgtcccctaagcttaatagca 320

                                                                       
Query: 121 agccctgtctctggggacagtgattacatcgggtgtaagtgaacaacttgaggtaatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccctgtctctggggacagtgattacatcgggtgtaagtgaacaacttgaggtaatgaa 380

                                                                  
Query: 181 atcagagtgagctctggtcttcatcttgcttttgtctgacagtctatggagggca 235
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcagagtgagctctggccttcatcttgcttttgtctgacagtctatggagggca 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)