BAC Information

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BAC

Clone NameMSMg01-320A09
Chromosome11 (Build37)
Map Location 30,732,876 - 30,733,064
singlet/doubletsinglet
Overlap genePsme4
Upstream geneC230094A16Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243
Downstream geneGpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320A09.T7 (MSMg01no320_a09.b1)MSMg01-320A09.TJ (MSMg01no320_a09.g1)
ACCAG439375AG439376
length784799
length of high quality
(start - end)
189 (184 - 372)201 (179 - 379)
definitionCHROMAT_FILE: MSMg01no320_a09.b1 PHD_FILE: MSMg01no320_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:27 2005CHROMAT_FILE: MSMg01no320_a09.g1 PHD_FILE: MSMg01no320_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTTTCTTTTTTAATTGAATTTCGCCTTTTTTTNCCTTTAAACNNNAAA
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCAAAAACGCGG
AATTCTTGCTACATTTTCCAAAAATATGACTTTTAAAAATATATTTTATA
AAAGAATATTGTATGTCGATTATACCTAAGAAAATATCAAGTGGATCCTA
TTTCTTAGAACTATCGCTAACTTTTAGAGTGCCTGTCTAGCATGTGTGAG
GCTCTAAATTTAAAATAATTTATTGAGTGATAAGATCTGTTACTCATGAT
CATTTATGTATCCATGTAGGGATTTGCTTAGTAGCATTCAGACTATCTTA
TAAAAATGTGAGAAAATTAAAAAATTTTAAAAGGAACATTGCCCACAGGC
ATGAACTTTGTGTGATTTTTTTTAAACCTCCCCCCCGCTGGTTTTGTGAT
CCAATATGAGAATCAGGATAAGCGGCTTTAGAAAAAAGAAAAGGACCAAT
ACTCCAAAGTTGTTCTGAACAGTGTTCTCTAGTATATGGTGATCAAATTG
AGTCTCTAAATGCCTATATACTATCTGTGCTGGTCACTGGAGATAGGAAG
AATATGTGTAAAGGAGTTGGATCTATGGAAGTCTGTTGAAGAATGCTAAA
CAGTAACATTATGCCCTAAGCTTGGATGCAAAAAGTTCATTGATTTTATA
TCCAGCAGTGGAGGTCCTAGTAAAGGAAAATGCATCTGTAAAATTGAACC
ACCATATTTAATTGAAAGCTTCGGATGAATTTGG
TTTCTCTTNCTNNCCCCCCTTACATTCAACCGTCCCCCCCATTTCCCCTC
GCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCCGAATTCCAGGACAGCCAGGGCTATACAGAGAA
ACCCTGTCTCGAAACAAATTTTTATCACAACAACAACAAAAACCACATGA
TCATCTAATTAGATGCTGAGAAAGCACTTTACAAAATCCAACACCCGTTC
ATGATAAAAGTCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAATCAT
AATAAAAGCAATATACAGCAAACTGGTAGCCAACAACAAAGGAAACGGAT
AAAGACTTGAAGCAATCCCACTAAAATTATGGAGTAGACAAGGCTGCCCA
CTGTCTCCCTACCTATTTTTTATCTTACCCCCCGCCCCAGCCAGAGTAAT
TAGACAATAAAAGGAGACCACAGGATTACAAATAGAAAAAGAAGAAGTCA
CAATACCACTCCTTGCAAATGATACGATAGCATATATAACTGTCCCCAAA
TACTCCACCAGACAACTCTTAATTCTGACAAACAACTTATCAAAGTAATC
GGACATACAATCAATTGAAACAAATCAGTGTGCCTTTCTCTACACAAAGG
ATAAACTATGCTGAAAAAGAAATTATAAGAAACAACATATTCTCCCAAAT
TGCCCCAAACAATATAAAAAAACCTTTGGCCGGGACCCTTCAATACATAG
TAAAGTGGAAAGATTCTAACACGACAACAAAACCTACAAGGTCTTACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_a09.b1 MSMg01no320_a09.b1 CHROMAT_FILE:
MSMg01no320_a09.b1 PHD_FILE: MSMg01no320_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:27 2005
         (189 letters)



>mm_chr11_30732676_30733264
          Length = 589

 Score =  358 bits (185), Expect = e-103
 Identities = 188/189 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatcaagtggatcctatttcttagaactatcgctaacttttagagtgcctgtctagcat 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 atatcaagtggatcctatttcttagaactattgctaacttttagagtgcctgtctagcat 260

                                                                       
Query: 61  gtgtgaggctctaaatttaaaataatttattgagtgataagatctgttactcatgatcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgaggctctaaatttaaaataatttattgagtgataagatctgttactcatgatcat 320

                                                                       
Query: 121 ttatgtatccatgtagggatttgcttagtagcattcagactatcttataaaaatgtgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatgtatccatgtagggatttgcttagtagcattcagactatcttataaaaatgtgaga 380

                    
Query: 181 aaattaaaa 189
           |||||||||
Sbjct: 381 aaattaaaa 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)