Query= MSMg01no321_c24.b1 MSMg01no321_c24.b1 CHROMAT_FILE:
MSMg01no321_c24.b1 PHD_FILE: MSMg01no321_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:52 2005
(294 letters)
>mm_chr11_4803462_4804155
Length = 694
Score = 538 bits (278), Expect = e-157
Identities = 290/294 (98%)
Strand = Plus / Minus
Query: 1 acaggcatttcagtgtgatgatagttattagtgacctaccacagagtcatctgcccatgt 60
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 494 acaggcatttcagtgtgatgatagttattagtgacttaccacagagtcatttgcccatgt 435
Query: 61 tgctcaccctacttatccacaaaccagctgaaggctggaggaggatgctcaatgaccttg 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgctcaccctacttatccacaaatcagctgaaggctggaggaggatgctcaatgaccttg 375
Query: 121 caggcctttcctagctgaacagaagtatcagctaagagactcagagtccctgcagcctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 caggcctttcctagctgaacagaagtatcagctaagagactcagagtccctgcagcctgg 315
Query: 181 gcttatgccatcatgatgaaaccaagacacgtcaccaggaaagataaacctaagagtcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gcttatgccatcatgatgaaaccaagacacgtcaccaggaaagataaacctaagagtcta 255
Query: 241 tacataactttaatacattttcccttgggggctggagagatggctcagcggtta 294
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tacataactttaaaacattttcccttgggggctggagagatggctcagcggtta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no321_c24.g1 MSMg01no321_c24.g1 CHROMAT_FILE:
MSMg01no321_c24.g1 PHD_FILE: MSMg01no321_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:52 2005
(542 letters)
>mm_chr11_4628916_4629856
Length = 941
Score = 893 bits (462), Expect = 0.0
Identities = 517/542 (95%), Gaps = 14/542 (2%)
Strand = Plus / Plus
Query: 6 gtggtggcgcacgcctttaataccagcacttgggaggcagaggcaggcggatctcagagt 65
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gtggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggcggatctcagagt 266
Query: 66 ttgaggtcaatgtagtctacagagtgagttccaggacagccagggctacacagagaaacc 125
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttgaggtcaacgtagtctacagagtgagttccaggacagccagggctacacagagaaacc 326
Query: 126 ctgtctcaaaaaacaaaaacaaacaaacaaaaaaaacctccaagcacataaaaaaaaatt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctgtctcaaaaaacaaaaacaaacaaacaaaaaaaacctccaagcacataaaaaaaaatt 386
Query: 186 aaagctcagtcaagggtatgtggcaagccctgtatttagagaaaagaatatatatttcaa 245
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaagcccagtcaagggtatgtggcaagccctgtatttagagaaaagaatatatatttcaa 446
Query: 246 attttta------tttaaaaatattagtaagtaagggaagtaaagacagtgaagggtgca 299
| | | ||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 447 a-----aaagaaat--aaaaatattagtaagcaagggaagtaaagacagtgaagggtgga 499
Query: 300 cagtcaggcgatggtggcataactggtctctgctgttctagaccccctgtgagctcctct 359
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 500 aagtcaggcgatggtggcataactggtctctgctgttttagagggcctgtgagctcctct 559
Query: 360 aagggattggcctgagcttctgggcagccaaagcaaaggtagaaaccacaaggacccaca 419
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 560 aagggattggcctgagctcctgggcagccaaa-caaaggtagaaaccacaaggacccaca 618
Query: 420 tcgtgtattcaggtgcttactgtgggcaagtccagactcccctcaggagacagtgctgcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tcgtgtattcaggtgcttactgtgggcaagtccagactcccctcaggagacagtgctgcc 678
Query: 480 tgaccagtgaccaccaggcctgcaggcttggccttggtatgtgtgctgctgctgctagtt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgaccagtgaccaccaggcctgcaggcttggccttggtatgtgtgctgctgctgctagtt 738
Query: 540 ag 541
||
Sbjct: 739 ag 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 941
Length adjustment: 10
Effective length of query: 532
Effective length of database: 931
Effective search space: 495292
Effective search space used: 495292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
