BAC Information

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BAC

Clone NameMSMg01-321E09
Chromosome11 (Build37)
Map Location 24,190,007 - 24,343,326
singlet/doubletdoublet
Overlap genenone
Upstream geneXpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream geneLOC100042282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321E09.T7 (MSMg01no321_e09.b1)MSMg01-321E09.TJ (MSMg01no321_e09.g1)
ACCAG440285AG440286
length748734
length of high quality
(start - end)
307 (45 - 351)300 (69 - 368)
definitionCHROMAT_FILE: MSMg01no321_e09.b1 PHD_FILE: MSMg01no321_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:58 2005CHROMAT_FILE: MSMg01no321_e09.g1 PHD_FILE: MSMg01no321_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,343,024 - 24,343,326)(24,190,007 - 24,190,306)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCATACCCCAGTTTCCAGAAAAACATCACATGACACAACTGGGT
CTCCCACAAAGCCACATCTCTCTACTTCACAGGTCCCTTGGTTATACCCA
GCACCTACTGGAGAATTAAAAGAACACCCAGTCTTACTAGTTAAAACACA
ATAGTTCCACTGAAACAAAGATGCCACGAATAAAGTCAAAAGTTGAGAGA
GGAATTGAGAAAACATTTTTAAATTAATTTTGTTTATTTATCTTATGTGT
ATTGTCTATATGTGTGTTCATATATCATGTGAGTGCCCAATGCCTCAGTG
GTCTTATGTGATTTTCACCACCCCCCCCACTAAGTTACAAGACAGCTGGG
AGCTTCCATGCCACCCCTGAAAAATAGAACAAGGCTCTTCAGCAAGAACA
ACCAGTGTCCCTAACCATTGAGCCATTGCTCCAGTCTTATGATAAAAAAT
TCTTTTTAAAGTATTGAGTTTCATGCATTTGTGAGTATGTGTGTATGCGT
GTGTGTGAGAGAGAGAGAGAGAGAAAGATATAGAGAGAATGAGAGAAACG
AATGACTGTGTGCGTTTGCCCCCCCGTGTTCTTCCTTGTTTTTTTCCCCT
TTTTATTTTCTTTTTGTTCCCCTTCTCCCTTCTCCCATCCATTTTTTTTC
CTTCCCCTCCCCTTTTCTTTTTTTTTTTTTCCGATATTTTCCCTTTTT
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCTCGCGGAATTCTCATATGTAAAATAGGTAACTTGCCAA
GAAGATATTGTCTCCCTGGACACCTCTGACAGCAGTGTGGGAGCTCCTGG
TGTTATTTCCAGTTGCCTGGACCATTGCAGATGCCTATGAGAGTGAACTG
TGGGAAGGAGGCTAGCACGGTGCATAGAGGATGATGTCCAGTAAGAGGGA
ACAGTTGCACTGTGTGCTCATACTTACATGAGATCTCTCTTCAGTTACAA
AGAGAAGCCTTGCATCATGTCACGTTCTTCAGAATCTAATCTAATCAAGT
TCCCCACAGTGGAAAACCAGACATTATATGGAGTGGTGGGGGGAAGAGTT
CTAGAGAACACCCCCCGACTACTGGGAGGGAGATCTTATGGTGGTAAAGA
CCCCATAAAGAGGTTAGTTAGCATAATTTTTATGTCTTCTCGTTGCGTGT
CAACGCACCCACACATGTATGAGGGATTCACCATTCACAGCGCTATACAC
TTTATCACCTCTGCACGTCTCCCCTATTCTTGATGATAGGAGGACCCGCT
TCTTTCCATCTCCTTTTCAGATAGGTTCTCACGCCGTATCACTGGCTGTT
TTTGAAACTTACTTTGCACCCCATTTTGTCTCCACTTAAATTTGCTTAAT
CCTGCCTCCCTTGTGCTGTTACTATCCACCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_e09.b1 MSMg01no321_e09.b1 CHROMAT_FILE:
MSMg01no321_e09.b1 PHD_FILE: MSMg01no321_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:58 2005
         (307 letters)



>mm_chr11_24342739_24343445
          Length = 707

 Score =  555 bits (287), Expect = e-162
 Identities = 299/303 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctcataccccagtttccagaaaaacatcacatgacacaactgggtctcccaca 64
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaattctctcataaaacagtttccagaaaaacatcacatgacacaactgggtctcccaca 529

                                                                       
Query: 65  aagccacatctctctacttcacaggtcccttggttatacccagcacctactggagaatta 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aagccacatctttctacttcacaggtcccttggttatacccagcacctactggagaatta 469

                                                                       
Query: 125 aaagaacacccagtcttactagttaaaacacaatagttccactgaaacaaagatgccacg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aaagaacacccagtcttactagttaaaacacaatagttccactgaaacaaagatgccacg 409

                                                                       
Query: 185 aataaagtcaaaagttgagagaggaattgagaaaacatttttaaattaattttgtttatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aataaagtcaaaagttgagagaggaattgagaaaacatttttaaattaattttgtttatt 349

                                                                       
Query: 245 tatcttatgtgtattgtctatatgtgtgttcatatatcatgtgagtgcccaatgcctcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tatcttatgtgtattgtctatatgtgtgttcatatatcatgtgagtgcccaatgcctcag 289

              
Query: 305 tgg 307
           |||
Sbjct: 288 tgg 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no321_e09.g1 MSMg01no321_e09.g1 CHROMAT_FILE:
MSMg01no321_e09.g1 PHD_FILE: MSMg01no321_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:59 2005
         (300 letters)



>mm_chr11_24189807_24190506
          Length = 700

 Score =  549 bits (284), Expect = e-161
 Identities = 296/300 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctcatatgtaaaataggtaacttgccaagaagatattgtctccctggacacctctg 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 aattctcatatgtaaaataggtaacttgccaagaagatagtgtctccctggacacctctg 260

                                                                       
Query: 61  acagcagtgtgggagctcctggtgttatttccagttgcctggaccattgcagatgcctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagcagtgtgggagctcctggtgttatttccagttgcctggaccattgcagatgcctat 320

                                                                       
Query: 121 gagagtgaactgtgggaaggaggctagcacggtgcatagaggatgatgtccagtaagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagtgaactgtgggaaggaggctagcacggtgcatagaggatgatgtccagtaagagg 380

                                                                       
Query: 181 gaacagttgcactgtgtgctcatacttacatgagatctctcttcagttacaaagagaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacagttgcactgtgtgctcatacttacatgagatctctcttcagttacaaagagaagc 440

                                                                       
Query: 241 cttgcatcatgtcacgttcttcagaatctaatctaatcaagttccccacagtggaaaacc 300
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 cttgcagcaggtcacgttcttcagaatctaatctaagcaagttccccacagtggaaaacc 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)