BAC Information

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BAC

Clone NameMSMg01-321H11
Chromosome11 (Build37)
Map Location 77,729,533 - 77,729,712
singlet/doubletsinglet
Overlap genenone
Upstream geneTmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox
Downstream geneSez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321H11.T7 (MSMg01no321_h11.b1)MSMg01-321H11.TJ (MSMg01no321_h11.g1)
ACCAG440428AG440429
length754840
length of high quality
(start - end)
176 (122 - 297)110 (74 - 183)
definitionCHROMAT_FILE: MSMg01no321_h11.b1 PHD_FILE: MSMg01no321_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:13 2005CHROMAT_FILE: MSMg01no321_h11.g1 PHD_FILE: MSMg01no321_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGAGGAGGGGCGGAAT
TCCAGATTTTTTCTTGAAAAGGCCCTGGTAAGAAAGCCTTGAGTCAGGAT
TCACCTCACTGAGAAAGGCAAGGCCACAAAAGCAAAAGAGTGGGGATTAG
ATGGTTATGGAGGCTGGGCCTTCTACTTGGTGTCTTCAGAACCCCAGCCC
CTAAGCAGCCCATCGGGCGCAGCCTCTGAGCGTGCGTGCTTTCCGATTCC
AGCAATGGGCAGCCAGCTCAGTCTGCTGTGGATTTAGAGTATGTCTGTGG
TACTGTGCACTGGTTTTCGACTCGCTGGCGATCGGGAGATTACACATTCT
TCTGCTCTGGGCGGCTGTCACCTGCTGGGAGGTGTAGCTCTGGTATTTAG
GAGGTCTCCTATCGCCGCTCGTTTGTTTCTGTCCACTTTGTTGTGTCGGC
CACTGACTGAGTTGGCTTTCTGAGGTAGACCCAGCAATGCATATTGATGT
GTACCATGCAAGTATGTAGCCTTGTTTTTTCTAGCTTTCTGTTCGCTAGG
GCTTTCCTTTCCCTCCTTTCCTATCCCCTCCCCTCTTTTTTTTTCCCCCT
CTTTTTCCGCCGATATCATGTTACATTCTTTTTCACCCTCTTTCTACGTA
ATACCCTAATACCTATCTGAAATTTTACCTTGTTCGCCAATTGAGTTTAA
GCCCCTGAGTATGTATCTTCCCTCCTTTAAATCTTAGGTTTTTTCATCTG
CCTT
TGCTGTGGGTAGGCCTGGCGGCGCCTGGTTTCGTATCGGGGGGAACTATA
GAAGGTTTCCGAAAACCAGAACGCCAGGGCTACCAGAGAACCCTGTCTCG
AACTGAAGGACCCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGATGACCATCTGCCTCATGCTCCTG
TCACCGGGTTTCCCCACCATGATGAACTGCATCCTTAGACTATGTGTCGA
GATAAATCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTTTTTTTCTCCCTGTATACCATATCGCCGGCATATACACGCA
TCTTTTTTTTCCCCCCCCCCCCCCCCCCCGCTTTATATAATACTATTTTA
TTTGTAAACAACCCCCCCCCCTCGTACGTTTAAATCCCCCGTTTTCGTTC
CCCTTTTCCCCCCTTTCCCCACTTCCCCCTTCTCTGTGTCTTGCACTCCT
CAGTTCTGTTTTTCTTCCGGTTCCTTCCTACCTTGTTCCCCTCTCCTTTC
TTTCGCGCTTTATCTCTCCCCCTCTATTTGTCACGTCAACCGTTCGCGCT
CTACTCTCTTTTCCCCCTCTTTTTTTTATTTTTTTCCCCTTTTCCTCCAT
TGCCCGCGCGTTAATTTTCGTTCTCCCCCTTTTTTCTCTATCGCGGCTTG
CCCTCTTGTCTTATTTTTCTTCTCCCTACTTTACATATTCCCCTTCTGCT
CTAGCCCCGCTCTGTGCTTTCCTACGGTGCTGCTCTCCCCCCCGTTGTTT
TTTTTTTTTTTCTCCGCTGGGTTCGTCACGTCTGCCTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_h11.b1 MSMg01no321_h11.b1 CHROMAT_FILE:
MSMg01no321_h11.b1 PHD_FILE: MSMg01no321_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:13 2005
         (176 letters)



>mm_chr11_77729333_77729912
          Length = 580

 Score =  313 bits (162), Expect = 3e-90
 Identities = 174/180 (96%), Gaps = 4/180 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggccacaaaagcaaaagagtggggattagatggttatggaggctgggccttctacttggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggccacaaaagcaaaagagtggggattagatggttatggaggctgggccttctacttggt 321

                                                                       
Query: 61  gtcttcagaaccccagcccctaagcagcccatcgggcgcagcctctgagcgt----gcgt 116
           |||||||||||||||||||| |||||||||||||||||||||||||||||||    ||||
Sbjct: 320 gtcttcagaaccccagccccaaagcagcccatcgggcgcagcctctgagcgtacgtgcgt 261

                                                                       
Query: 117 gctttccgattccagcaatgggcagccagctcagtctgctgtggatttagagtatgtctg 176
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gctttccaattccagcaatgggcagccagctcagtctgctgtggatttagagtatgtctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 580
Length adjustment: 8
Effective length of query: 168
Effective length of database: 572
Effective search space:    96096
Effective search space used:    96096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)