BAC Information

Click to search

BAC

Clone NameMSMg01-321H17
Chromosome11 (Build37)
Map Location 25,902,626 - 26,078,221
singlet/doubletdoublet
Overlap gene5730522E02Rik, LOC100042328
Upstream genenone
Downstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321H17.T7 (MSMg01no321_h17.b1)MSMg01-321H17.TJ (MSMg01no321_h17.g1)
ACCAG440440AG440441
length737738
length of high quality
(start - end)
373 (48 - 420)283 (431 - 713)
definitionCHROMAT_FILE: MSMg01no321_h17.b1 PHD_FILE: MSMg01no321_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:14 2005CHROMAT_FILE: MSMg01no321_h17.g1 PHD_FILE: MSMg01no321_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,902,626 - 25,902,994)(26,077,939 - 26,078,221)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATATGTCTCACCTACATGATTCCACGATTTCTTCTGCCAGGAT
ACAGACTATTCTATTACTCTAGCACACCCCTGGCACCCAGCACAAAGTTT
TGCCCATATTTTTTAACCAAGAACACTTCTTGACTTTTTACTTAAAAAAA
AAAAAACTGAGGCTGGGAGTATATTTCATTGGTAGAGCCCTTGTGTAGCA
TGTGTAAGCTTCTGGGATTGATTCCCAGCTCTGCAAAAGAAGAAAGGGTT
TATCAGCAAGTTATTTGCCCTCACTTGTTTGTTTGATTACAGAAACTCAT
TTTGGACCACATGAAATAAAACTTACAAACTGTGTCAGCAAAGGTAACTG
GAGGGAATGAACAAGTATACCACCACTGGCCCACGGTCTTCCATCTGCAA
CACTAAAAACAAAAAGCTTTAAAAGGCTTTTCATAACTCATGTGGCAGCA
AAACCAGACCTGAACTAATTTCAAGAAGATTATTTTGAATCTTTATTTAT
CCCACTCAGTGTGAATATTCATACATTTCAATGCCGAAACATGAATGTGT
TTGATTATAGGGTGCTGCCCCAGACCCAGCTGGAATATTGCATAATCTGT
AGTATGTGTACCATTTTACCTTTCTAAAAAAAAAAAAAAAGAAAAGAAAA
AATTCCTGAATGCAGAAATACACCTGCCCCAGGGGTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGATTTGTGGCTTTTGTCATTACCAAT
AACATAAATTCCCCATGGTAATTGTTAATTTCTCTGAAAGCAGAGTTAAG
AGAACACATTCACACAGGCCTTTGAAAGCTGCATGAGCTTTGGCTGGGTC
AAGTTTTGTTTTCAAAAGAAGGGAGTGGGGCAGCTAATTTGCATATACCA
AGGGAACCAATCCATGAGACCTAAAATCGATGATGCAGGTAAGAAGGGTA
GAGTTCTGTACTGAACCTCACACTTAGTGGAGAGAAGTGTGACCACATGT
ACAAGTGCAGATGCTGGCTTTTTAACGACAGCTTGTCATTCATGTTTATA
GTAGGCAAAGCCAAAGCACCCCCCCGCACATTCTCAGTGTTTCTCTGCAT
GGAAGAGCTACCTGGAGGATGGAGGATAGTGTAATGGGGCTAAGTGTAGT
TAAGTCTCATGAGAGAACCTATTTCCTTGGCCTTATGCATTTAGATGTAG
TAGTTGACCAGTTTTCTCCCATTTTCACTGACCCAATTTTAACTTCCCCA
TTCATGTGTCAAATAGAAATACTTGGCATATAAAAGCATCTATTGACTTA
CCTGTATTAGTCTCCATTACTGGTCTTGTCAGCTTAGTTCAGTGGCCAGT
AACCACTGAGCACTTAACAGGCAGTATTTGTTCATGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_h17.b1 MSMg01no321_h17.b1 CHROMAT_FILE:
MSMg01no321_h17.b1 PHD_FILE: MSMg01no321_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:14 2005
         (373 letters)



>mm_chr11_25902423_25903195
          Length = 773

 Score =  652 bits (337), Expect = 0.0
 Identities = 361/369 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctatatgtctcacctacatgattccacgatttcttctgccaggatacagactatt 63
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| 
Sbjct: 204 gaattctatatgtctcatctgcatgattccacgatttcttctgccaggatacagactatc 263

                                                                       
Query: 64  ctattactctagcacacccctggcacccagcacaaagttttgcccatattttttaaccaa 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctattactctagcactcccctggcacccagcacaaagttttgcccatattttttaaccaa 323

                                                                       
Query: 124 gaacacttcttgactttttacttaaaaaaaaaaaaactgaggctgggagtatatttcatt 183
           ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 324 gaacacttcttgactttttactttaaaaaaaaaaatctgaggctgggagtatatttcatt 383

                                                                       
Query: 184 ggtagagcccttgtgtagcatgtgtaagcttctgggattgattcccagctctgcaaaaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtagagcccttgtgtagcatgtgtaagcttctgggattgattcccagctctgcaaaaga 443

                                                                       
Query: 244 agaaagggtttatcagcaagttatttgccctcacttgtttgtttgattacagaaactcat 303
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaacgggtttatcagcaagttatttgccctcacttgtttgtttgattacagaaactcat 503

                                                                       
Query: 304 tttggaccacatgaaataaaacttacaaactgtgtcagcaaaggtaactggagggaatga 363
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 504 tttggaccacatgaaataaaacttagaaactgtgtcagcaaaggtaactggagggaatga 563

                    
Query: 364 acaagtata 372
           |||||||||
Sbjct: 564 acaagtata 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no321_h17.g1 MSMg01no321_h17.g1 CHROMAT_FILE:
MSMg01no321_h17.g1 PHD_FILE: MSMg01no321_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:14 2005
         (283 letters)



>mm_chr11_26077739_26078421
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctcagtgtttctctgcatggaagagctacctggaggatggaggatagtgtaatggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttctcagtgtttctctgcatggaagagctacctggaggatggaggatagtgtaatggggc 424

                                                                       
Query: 61  taagtgtagttaagtctcatgagagaacctatttccttggccttatgcatttagatgtag 120
           |||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 423 taagtgtagttaagcctcgtgagagaacctatttccttggccctatgcatttagatgtag 364

                                                                       
Query: 121 tagttgaccagttttctcccattttcactgacccaattttaacttccccattcatgtgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tagttgaccagttttctcccattttcactgacccaattttaacttccccattcatgtgtc 304

                                                                       
Query: 181 aaatagaaatacttggcatataaaagcatctattgacttacctgtattagtctccattac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaatagaaatacttggcatataaaagcatctattgacttacctgtattagtctccattac 244

                                                      
Query: 241 tggtcttgtcagcttagttcagtggccagtaaccactgagcac 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tggtcttgtcagcttagttcagtggccagtaaccactgagcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)