BAC Information

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BAC

Clone NameMSMg01-321P11
Chromosome11 (Build37)
Map Location 16,274,116 - 16,449,249
singlet/doubletdoublet
Overlap geneSec61g, Akt2-ps
Upstream geneLOC665660, Vstm2
Downstream geneLOC665689, LOC627583, Egfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321P11.T7 (MSMg01no321_p11.b1)MSMg01-321P11.TJ (MSMg01no321_p11.g1)
ACCAG440795AG440796
length742740
length of high quality
(start - end)
371 (47 - 417)247 (74 - 320)
definitionCHROMAT_FILE: MSMg01no321_p11.b1 PHD_FILE: MSMg01no321_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:49 2005CHROMAT_FILE: MSMg01no321_p11.g1 PHD_FILE: MSMg01no321_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,448,899 - 16,449,249)(16,274,116 - 16,274,362)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGAA
TTCATTTTATTTCCCAATATCTCAAATATATCAATGCGAAGCAGAGACAG
AATGTCACATATCAATAAAGAACAGTTATGAAGGCCAGTATCTCCCACAC
ACTAATCAACTGCAAACTGTTATTACTAGGGAGGACAACTTACCCCAAAA
TAAAGCATGATAACAAAATTATTATTGTTTTTGTTACTTCAGTATTTATC
CACAAAACACACGTCAGAATCCAGTGATAAATAGACAAGTATTTTTCTTT
TTCAGAGAAGTCCTAACCAATGCTTCTCAGTATTCACAGAGAATTGAGGA
GAAAATGTGATTTTTGTATAAGAGAACACATAATATTTAATAAAGGCACC
ATAAGGAAAATAAATGCACCACGGCCTTCCAGCCTGAGTGTATCTTTTGG
AAGAAAAGGCACATCCTTTCTACATGGTTTGAAGGAGAGAATAAAAGCAT
GTCCAAGAGAGAGAACAAAATTATTAGTTCTCCAAGCTCCTCCAATATTT
CAGTTATTTTAAGAAACAGGGACTCTGCTTGATGGTTCGTTCTACCCACA
TAAACTTAGAGTCTTCTAATGGCTTCTCCGTAATACCATGAAAAGTCATT
CATAATACCAATTTGCGCGCATACTGTTTTAAGACAGTAAAGATTATTTG
GTTATTATTTCTTGGCTTAAGATGATGCAAATAACGACAATN
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTCCTCTGCTATGTTTCATTGTTTCG
TCTTACCCAGGTCTGATAGGCACCCAGTTTTTCTATAGAAGGGTGACAAG
AAAAAGATAATCCAGAGTTGTCCTGAACACTCATCCAAGGTCCCTGTGGT
GACACAGGCCTATAAATGCAGTTCTACAAGAGAAGGACATTTGACAAGAC
GATTCCTAAAGCACCTCTCAATTCCATGATTCTATGACTTTAATGCATTT
CATATTGAGGAAAATGTTCATGATAATGTGTCCTCTTATCACATCATCTA
AAATAGGACATGATTTTTTAATAACCCGCCCCCCCCCAATTGCGTGCTGT
AATTTTTTTAAAATGCACCCCCCCACAAAAAGATAGTTCAAGTCTTTTAT
AGACACTAATGCTTTTTAGAAATTATTCTTTTCTTAGGTGGTGCCAGCAG
GAATCATTTACTCCTGGGGCTTCTCTGTCAGCATATACCTTTAACCTTGT
TCCACATTGTCTCAGGGTTAACAGCATAGATATACCATGATCTCTAACAT
GAAAATATAAAAAATTAACCTGAAATTCTTACTGAATGAAAAGACTTCTG
AATTAACATTCAAATTTCTCTTAACTCATTTTTGACATCCTTATATATTT
GACTGCTTATATTAACTTTTTGGAAACAAACTGTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_p11.b1 MSMg01no321_p11.b1 CHROMAT_FILE:
MSMg01no321_p11.b1 PHD_FILE: MSMg01no321_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:49 2005
         (371 letters)



>mm_chr11_16448680_16449450
          Length = 771

 Score =  663 bits (343), Expect = 0.0
 Identities = 349/351 (99%)
 Strand = Plus / Minus

                                                                       
Query: 20  aatatctcaaatatatcaatgcgaagcagagacagaatgtcacatatcaataaagaacag 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aatatctcaaatatatcaatgcgaagcagagacagaatgtcacatatcaataaagaacag 511

                                                                       
Query: 80  ttatgaaggccagtatctcccacacactaatcaactgcaaactgttattactagggagga 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttatgaaggccagtatctcccacacactaatcaactgcaaactgttattactagggagga 451

                                                                       
Query: 140 caacttaccccaaaataaagcatgataacaaaattattattgtttttgttacttcagtat 199
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 450 caacttaccccaaaataaagcatgataacaaaattattattgtttttgttactttagtat 391

                                                                       
Query: 200 ttatccacaaaacacacgtcagaatccagtgataaatagacaagtatttttctttttcag 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttatccacaaaacacacgtcagaatccagtgataaatagacaagtatttttctttttcag 331

                                                                       
Query: 260 agaagtcctaaccaatgcttctcagtattcacagagaattgaggagaaaatgtgattttt 319
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agaagtcctaaccaaggcttctcagtattcacagagaattgaggagaaaatgtgattttt 271

                                                              
Query: 320 gtataagagaacacataatatttaataaaggcaccataaggaaaataaatg 370
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtataagagaacacataatatttaataaaggcaccataaggaaaataaatg 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no321_p11.g1 MSMg01no321_p11.g1 CHROMAT_FILE:
MSMg01no321_p11.g1 PHD_FILE: MSMg01no321_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:49 2005
         (247 letters)



>mm_chr11_16273916_16274562
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcctctgctatgtttcattgtttcgtcttacccaggtctgataggcacccagtttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tgtcctctgctatgtttcattgtttcgtcttacccaggtctgataggcatccagtttttc 260

                                                                       
Query: 61  tatagaagggtgacaagaaaaagataatccagagttgtcctgaacactcatccaaggtcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tatagaagggtgacaagaaaaagataatccagagttgtcctgaacactcatccagggtcc 320

                                                                       
Query: 121 ctgtggtgacacaggcctataaatgcagttctacaagagaaggacatttgacaagacgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtggtgacacaggcctataaatgcagttctacaagagaaggacatttgacaagacgat 380

                                                                       
Query: 181 tcctaaagcacctctcaattccatgattctatgactttaatgcatttcatattgaggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctaaagcacctctcaattccatgattctatgactttaatgcatttcatattgaggaaa 440

                  
Query: 241 atgttca 247
           |||||||
Sbjct: 441 atgttca 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)