Query= MSMg01no322_m03.b1 MSMg01no322_m03.b1 CHROMAT_FILE:
MSMg01no322_m03.b1 PHD_FILE: MSMg01no322_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:47 2005
(659 letters)
>mm_chr11_90460594_90461654
Length = 1061
Score = 1129 bits (584), Expect = 0.0
Identities = 639/658 (97%), Gaps = 2/658 (0%)
Strand = Plus / Plus
Query: 4 ggaattccagacatacccctgaaagcaggaggtggagcagaggccatgaagggtgccgct 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 204 ggaattccagacagaaagctgaaagcaggaggtggagcagaggccatgaagggtgtcgct 263
Query: 64 tactggcttgctgcccagggcttgctcagcctgctttctcatacaacccaggaccaatta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tactggcttgctgcccagggcttgctcagcctgctttctcatacaacccaggaccaatta 323
Query: 124 cctagggttggcactacccactgtaggctgggccctcccatatcaagccttaatcaagaa 183
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 324 cctagggttggcactacccactgtaggctgggccctcccacatcaagccttaatcaagaa 383
Query: 184 aatgcctaacaaacttgcctacaaggcaacctgaagaaggcattatctttttcttttcca 243
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 384 aatgcctaacaaacttgcctacaaggcaacctgaagaaggcgttatccttttcttttcca 443
Query: 244 gttaacgccttcttcccacaaagcatcagcctgtgtagagtcaccacaaaagcccagcag 303
||| |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 444 gttgacgccttcttcccagaaagtatcagcctgtgtggagtcaccacaaaagcccagcag 503
Query: 304 tacaaactaaccggcagcgaggcccagggaa--gcctatctgtgcttccacacaagcctg 361
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 tacaaactaaccggcatcgaggcccagggagctgcctatctgtgcttccacacaagcctg 563
Query: 362 tctttttaaaatgcgagtcctgtaggaccgggggttctcaagtaagcttcttatgtttcc 421
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 564 tctttttaaaatatgagtcctgtaggaccgggggttcttaagtaagcttcttatgtttcc 623
Query: 422 atggctagcacgtttacccactgagctatcactctagccaaagggaaagaaactcatttc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atggctagcacgtttacccactgagctatcactctagccaaagggaaagaaactcatttc 683
Query: 482 catgttagcttagagccaaagactttgtttgttttatactagtgaagtactatgaacttc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catgttagcttagagccaaagactttgtttgttttatactagtgaagtactatgaacttc 743
Query: 542 taaatctaaatgttattaaataattgaaacccaaactgtcactcacttaattaaacaagc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 taaatctaaatgttattaaataattgaaacccaaactgtcactcacttaattaaacaagc 803
Query: 602 tacttcaagaaaccaatgactctccaatgtcctcctctccaagaacaaggcagttctt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tacttcaagaaaccaatgactctccaatgtcctcctctccaagaacaaggcagttctt 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1061
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1051
Effective search space: 682099
Effective search space used: 682099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_m03.g1 MSMg01no322_m03.g1 CHROMAT_FILE:
MSMg01no322_m03.g1 PHD_FILE: MSMg01no322_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:47 2005
(635 letters)
>mm_chr11_90613282_90614316
Length = 1035
Score = 1164 bits (602), Expect = 0.0
Identities = 623/630 (98%)
Strand = Plus / Minus
Query: 5 caataaatagaaatattattttctttccaaatgttgggccctatttcatctagtctccaa 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 631 caataaatagaaatattattttctttccaaacgttgggccctatttcatctagtctccaa 572
Query: 65 aggtgatcaatgcaataaagctgcctagaagttactcagtgatctaagctaaggtataca 124
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 571 aggtgatcgatgcaataaagctgcctagaagttactcagtgatccaagctaaggtataca 512
Query: 125 tgaatatggtcttttatcagacattggagaatctgctttgaaacacaaatgcacagagcc 184
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgaatatggtattttatcagacattggagaatctgctttgaaacacaaatgcacagagcc 452
Query: 185 tgagtaatattgtagttcaagaatgttttttgtacatttaatcctaaattctctaaatca 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgagtagtattgtagttcaagaatgttttttgtacatttaatcctaaattctctaaatca 392
Query: 245 gtaatcattgacttctcccatttataaagaattcaggctgtaagtaactgtgaaatgtta 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gtaatcattgacttttcccatttataaagaattcaggctgtaagtaactgtgaaatgtta 332
Query: 305 tatccattcattatggagtatttaaagagtatttaaatttaagaataaaggaagtgtttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tatccattcattatggagtatttaaagagtatttaaatttaagaataaaggaagtgtttt 272
Query: 365 caaatatttacaatagaatttaatttaactaatgaataatgtatgagttcttaaaagtgg 424
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 caaatatttacaacagaatttaatttaactaatgaataatgtatgagttcttaaaagtgg 212
Query: 425 taaagagtataataattattatttgttaattttttataaaagtagtcattatctttgttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 taaagagtataataattattatttgttaattttttataaaagtagtcattatctttgttc 152
Query: 485 attatttttatgaaaactaaaagtttacatattcagttaatatgcctttgaatgtttcta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 attatttttatgaaaactaaaagtttacatattcagttaatatgcctttgaatgtttcta 92
Query: 545 tcctcaaatatccccagaggatgtttttcctttgtgtacatatatgtacttgtatatatg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 tcctcaaatatccccagaggatgtttttcctttgtgtacatatatgtacttgtatatatg 32
Query: 605 tgtatgtgcacatgtgtgtgcgtgcatgta 634
||||||||||||||||||||||||||||||
Sbjct: 31 tgtatgtgcacatgtgtgtgcgtgcatgta 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
